| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,692,629 – 12,692,732 |
| Length | 103 |
| Max. P | 0.890191 |
| Location | 12,692,629 – 12,692,732 |
|---|---|
| Length | 103 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 75.44 |
| Shannon entropy | 0.45279 |
| G+C content | 0.53058 |
| Mean single sequence MFE | -35.41 |
| Consensus MFE | -14.86 |
| Energy contribution | -14.33 |
| Covariance contribution | -0.53 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.41 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.890191 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12692629 103 - 24543557 -------UAUGGAGGGCGG----ACAGGAUGACAGGCUGUCACUUGCGUGUUGACAAAUUUAUUAAUAAGG-----UACGAAGCGGCAUCGACCGUCGACGCCCCCAAAAAACACUAGA -------..(((.((((.(----.((((.((((.....)))))))))..((((((..(((....)))..((-----(.(((.......)))))))))))))))))))............ ( -31.80, z-score = -2.05, R) >droSim1.chr3L 12077079 102 - 22553184 -------UAUGGAGGGCGG----ACAGGAUGACAGGCUGUCACUUGCGUGUUGACAAAUUUAUUAAUAAGG-----UACGAGGCGGCAACGACCGUCGACGCCCCC-AAAAACACUAGA -------..(((.((((.(----.((((.((((.....)))))))))..((((((.....((((.....))-----))...((((....)).))))))))))))))-)........... ( -33.70, z-score = -2.49, R) >droSec1.super_0 4878179 100 - 21120651 ---------UGGAGGGCGG----ACAGGAUGACAGGCUGUCACUUGCGUGUUGACAAAUUUAUUAAUAAGG-----UACGAGGCGGCAUCGACCGUCGACGCCCCC-AAAAACACUAGA ---------(((.((((((----((.((.(((...((((((.(.(((.((((((........))))))..)-----)).).)))))).))).)))))..)))))))-)........... ( -33.10, z-score = -2.09, R) >droYak2.chr3L 12762589 101 - 24197627 --------ACGGAGGGCGG----ACAGGAUGACAGGCUGUCACUUGCGUGUUGACAAAUUUAUUAAUAAGG-----UACGAGGCGGCAUCGGCCGUCGACGCCCCC-AAAAACACUAGA --------..((.((((((----((((.........))))).(.(((.((((((........))))))..)-----)).).((((((....))))))..)))))))-............ ( -32.80, z-score = -1.42, R) >droEre2.scaffold_4784 12697902 102 - 25762168 -------CACGGAGGGCGG----GCAGGAUGACAGGCUGUCACUUGCGUGUUGACAAAUUUAUUAAUAAGG-----UACGAGGCGGCAUCGGCCGUCGACGCCCCC-AAAAACACUAGA -------...((.(((((.----(((((.((((.....))))))))).((((((........))))))...-----.....((((((....))))))..)))))))-............ ( -36.60, z-score = -2.14, R) >droAna3.scaffold_13337 19961658 98 + 23293914 -------CUUGGAGGGCGG----ACAGAAUGACAGCCUGUCACUUGCGUGUUGACAAAUUUAUUAAUAAGG-----UACGAGGCGGCGAGGCAAGUCGACGCCCCC-AAAGGCAC---- -------.((((.((((((----((((.........))))).(((((((.(((((..(((....)))...)-----).))).)).))))).........)))))))-))......---- ( -31.70, z-score = -1.46, R) >dp4.chrXR_group6 3486161 111 - 13314419 UCGCGGGGGCAAGUCGCAAAGUCGCAGGCGGACAGCCUGUCACUUGCGUGUUGACAAAUUUAUUAAUAAGGUACGAUACGAGGCGGUAGCAGCAGUCGACGCCCCCAACAC-------- ....((((((....(((((.((.((((((.....)))))).))))))).((((((...............(((...)))(..((....))..).)))))))))))).....-------- ( -44.50, z-score = -3.45, R) >droPer1.super_9 1781736 111 - 3637205 UCGCGGGGGCAAGUCGCAAAGUCGCAGGCGGACAGCCUGUCACUUGCGUGUUGACAAAUUUAUUAAUAAGGUACGAUACGAGGCGGUAGCAGCAGUCGACGCCCCCAACAC-------- ....((((((....(((((.((.((((((.....)))))).))))))).((((((...............(((...)))(..((....))..).)))))))))))).....-------- ( -44.50, z-score = -3.45, R) >droVir3.scaffold_13049 6114531 90 + 25233164 --------GUUGGGGGCGGA-UCACAGGCGGACAGCCUGUCACUUGCGUGUUGACAAAUUUAUUAAUAAGG-----UACGAAAUA----CGCCAGUCGACGCCCUCAA----------- --------.(((((((((..-...(((((.....)))))(((((.(((((((......((((....)))).-----.....))))----))).))).)))))))))))----------- ( -35.50, z-score = -3.72, R) >droMoj3.scaffold_6680 17899639 89 + 24764193 ---------UCGGGGGCGGA-UCACAGGCGGACAGGCUGUCAGUUGCGUGUUGACAAAUUUAUUAAUAAGG-----UACGAAAUG----CGGCAGUCGACGCCCUCAA----------- ---------..(((((((..-..((.(((((.....))))).(((((((.(((((..(((....)))...)-----).))).)))----)))).))...)))))))..----------- ( -29.90, z-score = -1.87, R) >consensus ________AUGGAGGGCGG____ACAGGAUGACAGGCUGUCACUUGCGUGUUGACAAAUUUAUUAAUAAGG_____UACGAGGCGGCAUCGGCAGUCGACGCCCCC_AAAAACAC____ ...............((((....((((.........))))...))))((((((((..............(........)...............))))))))................. (-14.86 = -14.33 + -0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:48 2011