| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,665,284 – 12,665,380 |
| Length | 96 |
| Max. P | 0.844177 |
| Location | 12,665,284 – 12,665,380 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 72.30 |
| Shannon entropy | 0.50083 |
| G+C content | 0.50013 |
| Mean single sequence MFE | -28.22 |
| Consensus MFE | -16.34 |
| Energy contribution | -16.94 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.89 |
| SVM RNA-class probability | 0.844177 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12665284 96 + 24543557 ACUUGGCCAGUGCC-CAGUGCCCCCUGCCGUUGGCAGUGGGAAAAGUGAAGUAAAGUGUCGAGUCGACUGAUGAUUGGCCAUCGACGCCGUUUGUGA ((((.((.....((-((.((((..........)))).))))....)).))))...(((((((((((((....).)))))..)))))))......... ( -31.20, z-score = -1.34, R) >droEre2.scaffold_4784 12670603 96 + 25762168 ACUUGGCCAUUGCC-CACUGCCCAUUGCCGUUGUCAGUGGGAAAAGUGAAGUGAAGUGAAGAGUCGACUGAUGAUUGGCCAUCGACGCCGUUUGUGA ((.((((((((...-((((.((((((((....).)))))))...)))).)))).........(((((.((.........)))))))))))...)).. ( -26.80, z-score = -0.49, R) >droSec1.super_0 4851299 96 + 21120651 ACUUGGCCAGUGCC-CAGUACCCAUUGCCGUUGGCAGUGGGAAAAGUGAAGUUAAGUGACGAGUCGACUGAUGAUUGACCAUCGACGCCGUUUGUGA (((.(((....)))-.))).(((((((((...)))))))))..........(((...((((.(((((.((.........)))))))..))))..))) ( -30.00, z-score = -1.68, R) >droSim1.chr3L 12051288 96 + 22553184 ACUUGGCCAGUGCC-CAGUGCCCAUUGCCGUUGGCAGUGGGAAAAGUGAAGUUAAGUGACGAGUCGACUGAUGAUUGGCCAUCGACGCCGUUUGUGA ...((((((((...-((((.(((((((((...))))))))).....(((.(((....)))...)))))))...))))))))....(((.....))). ( -33.50, z-score = -1.97, R) >droVir3.scaffold_13049 6080324 93 - 25233164 --UUGUUCAAUGCAAUAGUACUUGCCCGUAUUACUAGUUAUAGAUAUAA--CAGAAUGCGGCCUAAACAACCAAUCAGCGCGUUAUGUUGAAUAUAA --.((((((((((((......))))(((((((.((.(((((....))))--)))))))))).........................))))))))... ( -19.60, z-score = -1.34, R) >consensus ACUUGGCCAGUGCC_CAGUGCCCAUUGCCGUUGGCAGUGGGAAAAGUGAAGUAAAGUGACGAGUCGACUGAUGAUUGGCCAUCGACGCCGUUUGUGA ...((((((((....((((.(((((((((...)))))))))...............((......))))))...))))))))....(((.....))). (-16.34 = -16.94 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:43 2011