| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,654,980 – 12,655,034 |
| Length | 54 |
| Max. P | 0.543395 |
| Location | 12,654,980 – 12,655,034 |
|---|---|
| Length | 54 |
| Sequences | 4 |
| Columns | 54 |
| Reading direction | forward |
| Mean pairwise identity | 93.15 |
| Shannon entropy | 0.11565 |
| G+C content | 0.40903 |
| Mean single sequence MFE | -11.67 |
| Consensus MFE | -11.68 |
| Energy contribution | -11.67 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.64 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.543395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12654980 54 + 24543557 GCUUUUAUUUCAGCUUUGUCGGUGGCGAAACGCGAAAUAUUUAAGAAGCCAGCA (((((((((((.(((((((.....)))))..)))))))).....)))))..... ( -11.00, z-score = 0.01, R) >droSim1.chr3L 12040993 53 + 22553184 GCUUUUAUUUCAGCUUUGUCUGUGGCGAAACGCGAAAUAUUUAAGAAGCAGCC- (((((((((((.(((((((.....)))))..)))))))).....)))))....- ( -11.90, z-score = -0.70, R) >droSec1.super_0 4841122 53 + 21120651 GCUUUUAUUUCAGCUUUGUCUGUGGCGAAACGCGAAAUAUUUAAGAAGCAGCC- (((((((((((.(((((((.....)))))..)))))))).....)))))....- ( -11.90, z-score = -0.70, R) >droEre2.scaffold_4784 12660147 50 + 25762168 GCUUUUAUUUCAGCUUUGUCUGUGGCGAAACGCGAAAUAUUUAAGAAGCA---- (((((((((((.(((((((.....)))))..)))))))).....))))).---- ( -11.90, z-score = -1.19, R) >consensus GCUUUUAUUUCAGCUUUGUCUGUGGCGAAACGCGAAAUAUUUAAGAAGCAGCC_ (((((((((((.(((((((.....)))))..)))))))).....)))))..... (-11.68 = -11.67 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:43 2011