| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,626,061 – 12,626,157 |
| Length | 96 |
| Max. P | 0.945858 |
| Location | 12,626,061 – 12,626,157 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 64.50 |
| Shannon entropy | 0.66689 |
| G+C content | 0.40385 |
| Mean single sequence MFE | -15.67 |
| Consensus MFE | -8.62 |
| Energy contribution | -7.11 |
| Covariance contribution | -1.50 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.51 |
| SVM RNA-class probability | 0.945858 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12626061 96 - 24543557 AUUGUCCUUA-AUUCAUUAAAAAUCCGUACUCCUUAUAUCAACAUAU-CCUUAUGCCAUCCGCAUAUGAACAAUCGUGUGUGACUAACACUCAUGUGG ..........-...............................((((.-...)))).....(((((((((....))))))))).....(((....))). ( -13.10, z-score = -1.00, R) >droSim1.chr3L 12011517 96 - 22553184 AUUGUCCUUA-AUUCAUUAAAAAUCCGUACUCCUUAUAUCAACAUAU-CCUUAAACCAUCCACAUAUGAACAAUCAUGUGUGACUAACACUCAUGUGG ..........-....................................-............(((((((((....))))))))).....(((....))). ( -13.00, z-score = -1.65, R) >droSec1.super_0 4812187 86 - 21120651 AUUGUCCUUA-AUUCAUUAAAAAUCCGUACUCCU----------UAU-CCUUAUACCAUCCACAUAUGAACAUUCAUGUGUGACUAACACUCAUGUGG ..........-.......................----------...-............(((((((((....))))))))).....(((....))). ( -13.00, z-score = -1.97, R) >droYak2.chr3L 12691944 91 - 24197627 AUUGUCCUUA-AUUCGUAACAAAUCCGCACUGCUU------CAAUAUAUGCUUAAGCAUCCGCAUAUGAACCAUCAUGUGUGACUAACACUCAUGUGG ..........-.............(((((......------......((((....)))).(((((((((....)))))))))...........))))) ( -17.70, z-score = -1.55, R) >droEre2.scaffold_4784 12630523 91 - 25762168 AAUGUGCCUG-AUUCGUUAAAAAUCCGCAUUGCUU------CCAUAUGAGUUACACCCUCCACAUAUGAACAAUCAUGUGUGACUAACACUCAUGUGG ((((((...(-(((.......))))))))))....------((((((((((.........(((((((((....)))))))))......)))))))))) ( -25.46, z-score = -3.95, R) >dp4.chrXR_group6 3410116 91 - 13314419 --UGCCCUAACAGUCAUUCAAAAUCUGGACAUUCUG-GCCCAUCUCUAGUCUGUAGUCUCUACACAU----CCUGAUAUGCCCCGUGUGUGUGUGCGG --..........(((............))).....(-((..(((....((.(((((...))))).))----...)))..)))(((..(....)..))) ( -13.70, z-score = 1.63, R) >droPer1.super_9 1709040 91 - 3637205 --UGCCCUAACAGUCAUUAAAAAUCUGGACAUUCUG-GCCCAUCUCUAGUCUGUAGUCUCUACACAU----CCUGAUAUGCCCCGUGUGUGUGUGCGG --..........(((............))).....(-((..(((....((.(((((...))))).))----...)))..)))(((..(....)..))) ( -13.70, z-score = 1.39, R) >consensus AUUGUCCUUA_AUUCAUUAAAAAUCCGUACUCCUU____C_ACAUAU_CCUUAUACCAUCCACAUAUGAACAAUCAUGUGUGACUAACACUCAUGUGG ...........................................................(((((((((......)))((((.....))))..)))))) ( -8.62 = -7.11 + -1.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:38 2011