| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,067,150 – 5,067,268 |
| Length | 118 |
| Max. P | 0.638056 |
| Location | 5,067,150 – 5,067,268 |
|---|---|
| Length | 118 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.70 |
| Shannon entropy | 0.37965 |
| G+C content | 0.51383 |
| Mean single sequence MFE | -36.51 |
| Consensus MFE | -22.20 |
| Energy contribution | -22.00 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.638056 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5067150 118 + 23011544 CAGUACCUAUCUGGACGAUGAUAUAGACUCGAUGUACUCGUUCGCUACCACCACUUCGGGUCGCUCCACGAUGUCCUGCGAGCAUCCCUAUGUGGCCAGGUAGG--UGUUGCUUUAAUUA ((((((((((((((.((((((((((.......)))).))).)))......((((...(((..((((((.(....).)).))))..)))...)))))))))))))--)))))......... ( -40.80, z-score = -2.46, R) >droSim1.chrU 2233564 118 - 15797150 CAGUACCUAUCUGGACGAUGAUCUAGACUCGAUGUACUCGUUCGCCACCACCACUUCGGGUCGCUCCACGAUGUCCUGCGAGCAUCCCUAUGUGGCCAGGUAGG--UGGUGCUUUAAUUA ((.(((((((((((..(.(((.(.((((.....)).)).).))).)....((((...(((..((((((.(....).)).))))..)))...)))))))))))))--)).))......... ( -40.50, z-score = -1.73, R) >droSec1.super_5 3154053 118 + 5866729 CAGUACCUAUCUGGACGAUGAUCUAGACUCGAUGUACUCGUUCGCCACCACCACUUCGGGUCGCUCCACGAUGUCCUGCGAGCAUCCCUAUGUGGCCAGGUAGG--UGGUGCUUUAAUUA ((.(((((((((((..(.(((.(.((((.....)).)).).))).)....((((...(((..((((((.(....).)).))))..)))...)))))))))))))--)).))......... ( -40.50, z-score = -1.73, R) >droYak2.chr2L 11866648 118 - 22324452 CAGUACCUAUCUGGACGAUGAUCUAGACUCGAUGUACUCGUUCGCCACCACCACGUCGGGUCGCUCCACCAUGUCCUGCGAGCAUCCCUAUGUGGCCAGGUAGG--AUGUCUCUUGAUUA .....(((((((((..(.(((.(.((((.....)).)).).))).)....((((((.(((..((((((........)).))))..))).)))))))))))))))--.............. ( -38.20, z-score = -1.03, R) >droEre2.scaffold_4929 5146974 118 + 26641161 CAGCACCUAUCUGGAGGAUGAUCUAGACUCGAUGUACUCGUUCGCCACCACCACUUCGGGUCGCUCCACGAUGUCCUGCGAGCAUCCCUAUGUGGCCAGGUAGG--GGGUAUUUCAAUUA ..((.(((((((((.((.(((.(.((((.....)).)).).)))))....((((...(((..((((((.(....).)).))))..)))...)))))))))))))--..)).......... ( -40.00, z-score = -1.06, R) >droAna3.scaffold_12916 13704763 119 + 16180835 CAGUACCUAUCUGGAUGAUGAUCUAGACUCGAUGUACUCGUUCGCAACCACCACCUCGGGACGCUCCACGAUGUCCUGUGAGCAUCCCUAUGUGGCCAGGUAAUU-ACUUACUUUAAUUA .((((..(((((((.((.(((.(.((((.....)).)).).)))))....((((...((((.((((((.(....).)).)))).))))...)))))))))))..)-)))........... ( -33.30, z-score = -1.83, R) >dp4.chr4_group4 1586924 119 + 6586962 CAGCACCUAUCUGGAUGAUGAUCUAGACUCGAUGUACUCCUUUGCCACCACCACCUCGGGGCGUUCGACAAUGUCCUGCGAGCACCCCUAUGUGGCCAGGUAGGUGUAUUCUCUUAAUU- ..((((((((((((.((..((...((((.....)).))...))..))...((((...((((.(((((.((......))))))).))))...))))))))))))))))............- ( -42.60, z-score = -3.05, R) >droPer1.super_10 590430 119 + 3432795 AAGCACCUAUCUGGAUGAUGAUCUAGACUCGAUGUACUCCUUUGCCACCACCACCUCGGGGCGUUCGACAAUGUCCUGCGAACACCCCUAUGUGGCCAGGUAGGUGUAUUAUCUUAAUU- ..((((((((((((.((..((...((((.....)).))...))..))...((((...((((.(((((.((......))))))).))))...))))))))))))))))............- ( -42.60, z-score = -3.75, R) >droWil1.scaffold_180703 1358197 115 + 3946847 UAGCACCUAUCUGGAUGAUGAUUUAGAUUCCAUGUAUUCAUUUGUAACAACUACUUCGGGUCGUUCGACCAUGUCUUGUGAGCAUCCCUAUGUUGCCAGGUGAG-----UACUUCGAUCU ........((((((((....))))))))((...((((((((((((((((.........((((....))))(((((....)).))).....))))).))))))))-----)))...))... ( -27.60, z-score = -0.39, R) >droVir3.scaffold_12963 10144415 104 - 20206255 GAGCACCUAUCUGGAUGAUGAUCUAGAUUCGAUGUAUUCGUUUGCGACCACCACAUCGGGUCGUUCGACCAUGUCCUGCGAGCAUCCCUAUGUGGCCAGGUGAG---------------- ...(((((((((((((....)))))))).........(((....)))...((((((.(((..(((((.(........))))))..))).))))))..)))))..---------------- ( -35.10, z-score = -1.42, R) >droMoj3.scaffold_6500 1218195 104 + 32352404 UAGCACCUAUCUGGAUGAUGAUCUAGACUCGAUGUACUCAUUUGCGACCACAACAUCGGGUCGUUCAACCAUGUCCUGCGAGCACCCCUAUGUGGCCAGGUAAG---------------- .......(((((((....(((....((((((((((.................))))))))))..))).((((((..((....)).....)))))))))))))..---------------- ( -26.43, z-score = 0.00, R) >droGri2.scaffold_15252 11799179 101 + 17193109 GAGCACCUAUCUGGAUGAUGAUCUAGACUCGAUGUAUUCGUUUGCGACCACCACAUCCGGUCGCUCGACCAUGUCCUGCGAGCAUCCCUAUGUGGCCAGGU------------------- ..(((....(((((((....)))))))..(((.....)))..))).(((.((((((..((..(((((.(........))))))..))..))))))...)))------------------- ( -30.50, z-score = -0.65, R) >consensus CAGCACCUAUCUGGAUGAUGAUCUAGACUCGAUGUACUCGUUCGCCACCACCACUUCGGGUCGCUCCACCAUGUCCUGCGAGCAUCCCUAUGUGGCCAGGUAGG__U__UACUUUAAUUA .......(((((((..(((((.....((.....))..)))))........((((...(((..((((.............))))..)))...))))))))))).................. (-22.20 = -22.00 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:54 2011