| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,600,179 – 12,600,269 |
| Length | 90 |
| Max. P | 0.867730 |
| Location | 12,600,179 – 12,600,269 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 73.70 |
| Shannon entropy | 0.50241 |
| G+C content | 0.47302 |
| Mean single sequence MFE | -19.67 |
| Consensus MFE | -15.95 |
| Energy contribution | -16.04 |
| Covariance contribution | 0.09 |
| Combinations/Pair | 1.06 |
| Mean z-score | -0.80 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.867730 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12600179 90 - 24543557 -----------------------UCACCACCCCACCUCCU--UCCCCAGAAAGGCUUCUUACUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAUUUGGACAUGAAAUUGUCGCUU -----------------------...........(((..(--((....))))))..........(((((..((((((((((..((....))......))))))))))...))))) ( -17.90, z-score = -0.56, R) >droGri2.scaffold_15110 7650505 115 + 24565398 CCCAUUUAUCCUGCUGCUGCCUCCUCAUCCUCCCCCUUCUCGACUGCUGUGCUUCCUCUUGCUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAAUUGGACAUGAAAUUGUCGCUU ............((....))....................((((.(((..((........))...)))...((((((((((..((....))......)))))))))).))))... ( -19.80, z-score = -0.40, R) >droMoj3.scaffold_6680 17793619 101 + 24764193 ----CCCAUCCU--UG-AGCCUCACUCCACUCCACUC-------AGCUUUGCUUCCUCUUACUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAAUUGGACAUGAAAUUGUCGCUU ----.......(--((-((...............)))-------))..................(((((..((((((((((..((....))......))))))))))...))))) ( -18.16, z-score = -0.24, R) >droVir3.scaffold_13049 6002989 111 + 25233164 -CCUCCCAUUUUGCUGCUGCCGCCUCCCAUUCCGCUGGCUG---UGCCAUGCUUCCUCUUACUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAAUUGGACAUGAAAUUGUCGCUU -...........((((..((.(((............))).)---)..)).))............(((((..((((((((((..((....))......))))))))))...))))) ( -24.50, z-score = -0.56, R) >droWil1.scaffold_181136 2273682 86 + 2313701 -----------------------UCCCAGCCCAACC--C----CUCCCAUUCUGCUGCUUACUUAAGUGUUGUUUCAUGUCACCUGAAAACCAUUUGGACAUUAAAUUGUCGCUU -----------------------...((((......--.----..........)))).......(((((..((((.(((((...((.....))....))))).))))...))))) ( -12.03, z-score = -0.77, R) >droYak2.chr3L 12664616 88 - 24197627 ------------------------UCACA-CCCACCUCCU--GCCCCUGAAAGGCUUCUUACUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAUUUGGACAUGAAAUUGUCGCUU ------------------------.....-..........--(((.......))).........(((((..((((((((((..((....))......))))))))))...))))) ( -19.70, z-score = -1.06, R) >droEre2.scaffold_4784 12604345 88 - 25762168 ------------------------UCACA-CCCACCUCCU--UCCCCUGAAAGGCUUCUUACUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAUUUGGACAUGAAAUUGUCGCUU ------------------------.....-.......(((--(.......))))..........(((((..((((((((((..((....))......))))))))))...))))) ( -17.80, z-score = -0.69, R) >droAna3.scaffold_13337 19869789 88 + 23293914 -----------------------CUCCUGCCCGGCCAUC----CCCCCGGACGGCUUCUUACUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAUUUGGACAUGAAAUUGUCGCUU -----------------------.........((((.((----(....))).))))........(((((..((((((((((..((....))......))))))))))...))))) ( -25.30, z-score = -1.83, R) >droPer1.super_9 1683073 90 - 3637205 -----------------------GCCCUGGCCCCCCAUCU--GCCCCCAGACUGCUGCCUCCUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAUUUGGACAUGAAAUUGUCGCUU -----------------------.....(((....(((((--(....)))).))..))).....(((((..((((((((((..((....))......))))))))))...))))) ( -22.70, z-score = -1.42, R) >dp4.chrXR_group6 3384270 90 - 13314419 -----------------------GCCCUGGCCCCCCAUCU--GCCCCCAGACUGCUGCCUCCUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAUUUGGACAUGAAAUUGUCGCUU -----------------------.....(((....(((((--(....)))).))..))).....(((((..((((((((((..((....))......))))))))))...))))) ( -22.70, z-score = -1.42, R) >droSim1.chr3L 11985667 89 - 22553184 -----------------------UCAACA-CCCACCUCCU--UCCACAGAAAGGCUUCUUACUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAUUUGGACAUGAAAUUGUCGCUU -----------------------......-....(((..(--((....))))))..........(((((..((((((((((..((....))......))))))))))...))))) ( -17.90, z-score = -0.50, R) >droSec1.super_0 4786486 89 - 21120651 -----------------------UCAACA-CCCACCUCCU--UCCACAGAAAGGCUUCUUACUUAAGUGUUGUUUCGUGUCACCUGGAAAGCAUUUGGACAUGAAAUUGUCGCUU -----------------------......-....(((..(--((....))))))..........(((((..((((((((((..((....))......))))))))))...))))) ( -17.50, z-score = -0.14, R) >consensus _______________________UCCCCACCCCACCUCCU___CCCCCGAACGGCUUCUUACUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAUUUGGACAUGAAAUUGUCGCUU ................................................................(((((..((((((((((..((....))......))))))))))...))))) (-15.95 = -16.04 + 0.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:34 2011