| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,595,517 – 12,595,615 |
| Length | 98 |
| Max. P | 0.929079 |
| Location | 12,595,517 – 12,595,615 |
|---|---|
| Length | 98 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 71.79 |
| Shannon entropy | 0.57028 |
| G+C content | 0.45287 |
| Mean single sequence MFE | -29.95 |
| Consensus MFE | -17.26 |
| Energy contribution | -17.20 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.34 |
| SVM RNA-class probability | 0.929079 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12595517 98 - 24543557 GUUCCAAUUUGCAGCACAAUGCAAAUUGCAUUGUAGUCGAGUUAUUGUAUAAUUGGUGCAAUGUAGCCGGG-GCAA-GCGAUGG-UCGC--UCUACGGACUAU---------------- ((.(((((((((((((((((((.....))))))).))........)))).)))))).))...(((((((..-(..(-(((....-.)))--))..))).))))---------------- ( -29.70, z-score = -1.26, R) >droSim1.chr3L 11981004 98 - 22553184 GUUCCAAUUUGCAGCACAAUGCAAAUUGCAUUGUAGUCGAGUUAUUGUAUAAUUGGUGCAAUGUAGCCGGG-GCAA-GCGAUGG-UGGC--UCUACGGACUAU---------------- (((((((((((((......))))))))((((((((..(.((((((...)))))).)))))))))....)))-))..-......(-(((.--((....))))))---------------- ( -27.80, z-score = -0.45, R) >droSec1.super_0 4781807 98 - 21120651 GUUCCAAUUUGCAGCACAAUGCAAAUUGCAUUGUAGUCGAGUUAUUGUAUAAUUGGUGCAAUGUAGCCGGG-GCAA-GCGAUGG-UGGC--UCUACGGACUAU---------------- (((((((((((((......))))))))((((((((..(.((((((...)))))).)))))))))....)))-))..-......(-(((.--((....))))))---------------- ( -27.80, z-score = -0.45, R) >droYak2.chr3L 12659772 116 - 24197627 GUUCCAAUUUGCAGCACAAUGCAAAUUGCAUUGUAGUCGAGUUAUUGUAUAAUUGGUGCAAUGUAGCCGGG-GCCG-GCGAUGG-UGGAAAAUGAAGGAGUCCGGCUCCAUGGACACUC ((((((.(((.((.((((((((.....))))))).(((....((((((((.....))))))))..((((..-..))-)))))).-)).))).....((((.....)))).)))).)).. ( -38.00, z-score = -1.62, R) >droEre2.scaffold_4784 12599470 115 - 25762168 GUUCCAAUUUGCAGCACAAUGCAAAUUGCAUUGUAGUCGAGUUAUUGUAUAAUUGGUGCAAUGUAGCCGGG-GCAA-GCGAUGG-UGGCAAAUGAAGGAGUCCGGCUCCACGGACACU- ..(((.((((((.(((((((((.....))))))).((((...((((((((.....))))))))..((....-))..-.)))).)-).))))))...)))(((((......)))))...- ( -39.80, z-score = -2.15, R) >droAna3.scaffold_13337 19865823 107 + 23293914 GUUCCAAUUUGCAGCACAAUGCAAAUUGCAUUGUAGUCGAGUUAUUGUAUAAUUGGUGCAAUGUAGCCGGGCGCAAUGUGGUGG-GAGUGGGUGUGGGAGUCUGCCUC----------- .(((((.((((((......))))))(..((((((..(((.((((((((((.....)))))..))))))))..))))))..))))-))..(((.(..(....)..))))----------- ( -31.50, z-score = -0.32, R) >droPer1.super_9 1678683 114 - 3637205 GUUCCAAUUUGCAGCACAAUGCAAAUUGCAUUGUAGUCGAGUUAUUGUAUAAUUGGUGCAAUGUUGUCUGG-ACAGGGGAACAGUCAGCCAGUCAGCCAGUCCGCCAGUCCGCCC---- .....((((((..(((((((((.....))))))).))))))))........(((((((....((((.((((-....(....)......)))).)))).....)))))))......---- ( -30.30, z-score = -0.49, R) >droWil1.scaffold_181136 2266255 86 + 2313701 GUUCCAAUUUGCCAUGCAAUGCAAAUUGUAUUGUAGUCGAGUUAUAGGAUAAUUGGUGCGAUGUUCAAUAU-ACGAACGGAUGUGCU-------------------------------- ..(((((((((...((((((((.....))))))))..))))))...))).....((..((.(((((.....-..)))))..))..))-------------------------------- ( -21.40, z-score = -0.88, R) >droVir3.scaffold_13049 5997118 86 + 25233164 GUUCCAAUUUGCAGCUGAAUGCAAAUUGUAUUGUAGUCGAGUUAUUGUAUAAUUGGUGCAAUGUCGACUGG-GCCGGGCACCG--CAGC------------------------------ (((((((((((((......)))))))))...(.(((((((..((((((((.....))))))))))))))).-)..))))....--....------------------------------ ( -27.10, z-score = -1.50, R) >droGri2.scaffold_15110 7645590 76 + 24565398 GUUCCAAUUUGCAGCACAAUGCAAAUUGUAUUGUAGUCGAGUUAUUGUAUAAUUGGUGCAAUGUCGACGGU-GCAAC------------------------------------------ ........(((((.((((((((.....))))))).(((((..((((((((.....)))))))))))))).)-)))).------------------------------------------ ( -26.10, z-score = -3.47, R) >consensus GUUCCAAUUUGCAGCACAAUGCAAAUUGCAUUGUAGUCGAGUUAUUGUAUAAUUGGUGCAAUGUAGCCGGG_GCAA_GCGAUGG_UGGC___U_A_GGAGUCU________________ ((.((((((((((......))))))))((((((((..(.((((((...)))))).))))))))).....)).))............................................. (-17.26 = -17.20 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:31 2011