| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,591,897 – 12,591,975 |
| Length | 78 |
| Max. P | 0.618414 |
| Location | 12,591,897 – 12,591,975 |
|---|---|
| Length | 78 |
| Sequences | 6 |
| Columns | 86 |
| Reading direction | forward |
| Mean pairwise identity | 82.37 |
| Shannon entropy | 0.30775 |
| G+C content | 0.40665 |
| Mean single sequence MFE | -16.07 |
| Consensus MFE | -11.73 |
| Energy contribution | -11.93 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.73 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.618414 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12591897 78 + 24543557 ACAAUGUUCGUGCGUCUUGGGCAUAAACAAUAGAAAUGGCUUA-------GCUUAGACUAAGCCGCUUUCUCUUAUCUA-AAGUCG ....((((..(((.......)))..))))..((((((((((((-------(......)))))))).)))))........-...... ( -21.00, z-score = -2.49, R) >droAna3.scaffold_13337 19862604 86 - 23293914 ACAAUGUUCGUGCUUCCUGGACAUAAACAAUGGAAAACAUAAACCAAAAUGCUAAUCUUAAGACGCUUUCCCUCAUCUUUAAGCCA .((.((((..((((....)).))..)))).))................................((((............)))).. ( -8.10, z-score = 0.74, R) >droEre2.scaffold_4784 12595900 73 + 25762168 ACAAUGUUCGUGCGUCUUAAGCAUAAGCAAUAGAAAUGGCUAA-------GC-----AAAAGCCGCUUUCUCUUAUCUA-AAGUCG ....((((..(((.......)))..))))..((((((((((..-------..-----...))))).)))))........-...... ( -16.20, z-score = -1.73, R) >droYak2.chr3L 12656072 73 + 24197627 ACAAUGUUCGUGCGUCUUAAGCAUAAACAAUGGAAAUGGCUAA-------GC-----CAAAGCCGCUUUCUCUUAUCUA-AAGUCG .((.((((..(((.......)))..)))).))(((((((((..-------..-----...))))).)))).........-...... ( -17.10, z-score = -2.26, R) >droSec1.super_0 4778291 73 + 21120651 ACAAUGUUCGUGCGUCUUGGGCAUAAACAAUAGAAAUGGCUUA-------GC-----CUAAGCCGCUUUCUCUUAUCUA-AAGUCG ....((((..(((.......)))..))))..((((((((((((-------..-----.))))))).)))))........-...... ( -17.00, z-score = -1.58, R) >droSim1.chr3L 11977469 73 + 22553184 ACAAUGUUCGUGCGUCUUGGGCAUAAACAAUAGAAAUGGCUUA-------GC-----CUAAGCCGCUUUCUCUUAUCUA-AAGUCG ....((((..(((.......)))..))))..((((((((((((-------..-----.))))))).)))))........-...... ( -17.00, z-score = -1.58, R) >consensus ACAAUGUUCGUGCGUCUUGGGCAUAAACAAUAGAAAUGGCUAA_______GC_____CUAAGCCGCUUUCUCUUAUCUA_AAGUCG ....((((..(((.......)))..))))..((((((((((...................))))).)))))............... (-11.73 = -11.93 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:29 2011