| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,586,031 – 12,586,138 |
| Length | 107 |
| Max. P | 0.718610 |
| Location | 12,586,031 – 12,586,138 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 64.75 |
| Shannon entropy | 0.66024 |
| G+C content | 0.39253 |
| Mean single sequence MFE | -21.72 |
| Consensus MFE | -10.10 |
| Energy contribution | -11.63 |
| Covariance contribution | 1.53 |
| Combinations/Pair | 1.37 |
| Mean z-score | -0.89 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.718610 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12586031 107 - 24543557 CAUUCGGGCAACUAAGUACGGUGUAUGUUCUCCAUACAAUCUGCGUGUU-UUUGGGUUCAGAAAGGACU-ACUUCAAUAAGCAGAUUGGUAGAAAAAGAUAGAAAAACG ..(((((....))...(((((.(......).))...((((((((.((((-....(((((.....)))))-.....)))).))))))))))))))............... ( -23.80, z-score = -1.19, R) >droSim1.chr3L 11970372 107 - 22553184 CAUUCGGGCAACUAAGUACGGUGUAUGUUCCCUCUACAAUCUGCGUGUU-UUUGGGUUCAGAAAGGACU-ACUUCAAUAAGCAGAUUGGUAGAAAAUGAUAGAAAAACG ..((((((.(((...((((...))))))))))((((((((((((.((((-....(((((.....)))))-.....)))).))))))).)))))........)))..... ( -27.20, z-score = -1.76, R) >droSec1.super_0 4772418 97 - 21120651 CAUUCGGGCAACUAACUACGGUGUAUGUUCUCCCUACAAUCUGCGUGUU-UUUGGUUUCAGAAAGGACU-ACUUCAAUAAGCAGAUUGGUAGAAAAACG---------- ..((((((.(((..((....))....)))..)))..((((((((.((((-..((((((......)))))-)....)))).))))))))...))).....---------- ( -24.00, z-score = -1.63, R) >droYak2.chr3L 12649982 98 - 24197627 CAUUCAGGCAACUAAGUGCGGUGUAUGUUCUCCCUACAAUCUGUUUUUUAUUUUGGGUCAGGAAGAACU-ACUUUAAUAAGCAGAUUGAUAGAAAAAUA---------- ((((.((....)).)))).((.(......).))(((((((((((((.(((...(((.((.....)).))-)...))).)))))))))).))).......---------- ( -21.20, z-score = -0.98, R) >droEre2.scaffold_4784 12588160 87 - 25762168 CAUUCAGGCAACUAAGUGCGGUGUAUGUCCUCCCUACAAUCUGCGGUUU-UUCGGGUUCAGGAAGGACU-ACUUCAAAUAGCAGAUGGA-------------------- ((((.((....)).)))).((.(((.(((((.(((..((((((......-..)))))).))).))))))-)).))..............-------------------- ( -21.20, z-score = -0.02, R) >droVir3.scaffold_13049 5983949 106 + 25233164 CAUUCGCAAAAUUUGUUCUCUCUUCCAUACCAUUGUACUUAUAAGUAGCCUGCAAGGAUAGCACAAGCUGACGACUGAAUAAAGUUUAAAAAAAAAAAAAACAAUG--- ...........(((((((..((.......((.(((((((.......))..))))))).((((....))))..))..))))))).......................--- ( -12.90, z-score = 0.22, R) >consensus CAUUCGGGCAACUAAGUACGGUGUAUGUUCUCCCUACAAUCUGCGUGUU_UUUGGGUUCAGAAAGGACU_ACUUCAAUAAGCAGAUUGAUAGAAAAAGA__________ .....((....)).......................((((((((.((((.....(((((.....)))))......)))).))))))))..................... (-10.10 = -11.63 + 1.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:28 2011