| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,573,552 – 12,573,648 |
| Length | 96 |
| Max. P | 0.789086 |
| Location | 12,573,552 – 12,573,648 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 85.16 |
| Shannon entropy | 0.25842 |
| G+C content | 0.56572 |
| Mean single sequence MFE | -33.94 |
| Consensus MFE | -23.94 |
| Energy contribution | -24.74 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.789086 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12573552 96 - 24543557 UCGAAAGAGAAACGGAAUGCCGCUCGCCUU-GGAGCGAGCAACAAGAAUAACGG---AGUCGGCAGACUGGAAGUGUAAGCACU-CUAGAGCAACGCCCAC ((....)).....((..((((((((((...-...)))))).....((.......---..))))))..(((((.(((....))))-))))........)).. ( -29.10, z-score = -1.48, R) >droSim1.chr3L 11957829 100 - 22553184 UCGAAAGAGAAACGGAAUGCCGCUCGCCUU-GGAGCGAGCAACAACAAUAACGGACUAGUCGGCAGACUGGAAGUGUAAGCACUCCUCGGGCAACGCCCAC ((....)).....(((.(((.((((((...-...))))))...............((((((....))))))........))).)))..((((...)))).. ( -35.30, z-score = -2.55, R) >droSec1.super_0 4760020 100 - 21120651 UCGAAAGAGAAACGGAAUGCCGCUCGCCUU-GGAGCGAGCAACAACAAUAACGGAGUAGUCGGCAGACUGGAAGUGUAAGCACUCCUAGGGCAACGCCCAC ((....)).....((..((((((((((...-...)))))).((..(......)..))....))))..))(((.(((....))))))..((((...)))).. ( -32.90, z-score = -1.92, R) >droYak2.chr3L 12637002 98 - 24197627 AGGGGGGAAAGAGGGCAUGCCGCUCGCCUUGGGAGCGAGCAACAA-AACAAUGAAG-AGCCGGCAGUCUGGAAGUGUAAGCACU-UUCGGGCAACGCCCAC ............((((.(((((((((((....).))))))..((.-.....))...-....))))(((((((((((....))))-)))))))...)))).. ( -42.20, z-score = -3.25, R) >droEre2.scaffold_4784 12575947 94 - 25762168 ---GAGGAGAAGAGGAAUGCCGCUCGCCUU-GGAGCGCGCAACAA-AACAAUGAAG-AGCCGGCAGACUGGAAGUGCUAGCACU-UUCGGGCAACGCCCAC ---.........((...((((((((.....-.))))((.(..((.-.....))..)-.)).))))..))(((((((....))))-)))((((...)))).. ( -30.20, z-score = -0.80, R) >consensus UCGAAAGAGAAACGGAAUGCCGCUCGCCUU_GGAGCGAGCAACAA_AAUAACGGAG_AGUCGGCAGACUGGAAGUGUAAGCACU_CUCGGGCAACGCCCAC ......(((...(((..(((((((((((....).))))))............(.......)))))..)))..((((....)))).)))((((...)))).. (-23.94 = -24.74 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:27 2011