| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,567,477 – 12,567,575 |
| Length | 98 |
| Max. P | 0.535927 |
| Location | 12,567,477 – 12,567,575 |
|---|---|
| Length | 98 |
| Sequences | 10 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 67.21 |
| Shannon entropy | 0.66040 |
| G+C content | 0.44046 |
| Mean single sequence MFE | -23.60 |
| Consensus MFE | -13.12 |
| Energy contribution | -12.66 |
| Covariance contribution | -0.46 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.29 |
| Structure conservation index | 0.56 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.535927 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12567477 98 + 24543557 GAUUAUGCAAUUGUCACCGAUUGCGUGGCAAAGUGGCGCCUGAUAAGCGUUGCAAAUGGAAUUAUGUGCCAUAUGAAGUGCGAGUAAGUAUCUGUAUC------------- (.(((((((((((....))))))))))))...(..((((.......))))..)..(((((.((((.((((.......).))).))))...)))))...------------- ( -24.40, z-score = -0.00, R) >droSim1.chr3L 11951616 88 + 22553184 GAUUAUGCAAUUGUCACCGAUUGCGUGGCAAAGUGGCGCCUGAUAAGCGUUGCAAAUGGAAUUAUGUGCCAUAUGAAGUGCGAGUAUC----------------------- ...((((((((((....))))))))))(((..(..((((.......))))..)..((((.........))))......))).......----------------------- ( -24.10, z-score = -0.57, R) >droSec1.super_0 4753878 88 + 21120651 GAUUAUGCAAUUGUCACCGAUUGCGUGGCAAAGUGGCGCCUGAUAAGCGUUGCAAAUGGAAUUAUGUGCUAUAUGAAGUGGUAGUAUC----------------------- (.(((((((((((....))))))))))))...(..((((.......))))..)............(((((((........))))))).----------------------- ( -24.00, z-score = -0.93, R) >droYak2.chr3L 12630765 96 + 24197627 GAUUAUGCAAUUGUCACCGAUUGUGUGGCAAAGUGGCGCCUGAUAAGCGUCGCAAAUGGAAUUAUGUGCCAUAUGAAGUGCGAGUGAGUGAGUCUC--------------- ((((...((.(((.(((...(..(((((((..(((((((.......)))))))..(((....))).)))))))..).)))))).))....))))..--------------- ( -27.40, z-score = -1.10, R) >droEre2.scaffold_4784 12570031 90 + 25762168 GAUUAUGCAAUUGUCACCGAUUGUGUGGCAAAGUGGCGCCUGAUAAGCGUCGCAAAUGGAAUUAUGUGGCAUAUGAAGUGCG-GCGAGUGA-------------------- (.(((((((((((....))))))))))))...(((((((.......)))))))...........(((.((((.....)))).-))).....-------------------- ( -25.70, z-score = -0.24, R) >droAna3.scaffold_13337 19836871 101 - 23293914 GAUUAUGCAAUUGUCACCGAUUGCGUUGCAAAGUGGCGCCUGAUAAGCGUCGCAAAUUAAAUUAUAUGCCGUAUGAAGUGCGAACACCAGACAGCCUGAUA---------- ......(((((((....)))))))((((((..(((((((.......)))))))........((((((...))))))..))).)))..(((.....)))...---------- ( -24.80, z-score = -0.43, R) >dp4.chrXR_group6 3351333 109 + 13314419 --GUAUGCAAUUGUCACCGAUCGCGUCGGUAAGUGGCGCCUGAUAAGCGUCGCAAAUUAAAUAAAAUACAGUAUGAAAUAUCUUGAGGCAGCUUCUCAGCGAAUGCGAAUG --...(((((((((.((((((...))))))..(((((((.......)))))))..............)))))........((((((((.....)))))).)).)))).... ( -26.80, z-score = -0.18, R) >droMoj3.scaffold_6680 17761303 98 - 24764193 GAUUGAGCCAUUGUCACCGAUUGUCUUUGGGCCUGGCGCCUGAUAAGCGCCGCAAAUUAAAUGAAAUAUAUUAUAUAAGAAAAGAGAGGGGAAGAGUG------------- .......((.((.((.((((......))))((..(((((.......)))))))..............................)).)).)).......------------- ( -17.60, z-score = 1.00, R) >droGri2.scaffold_15110 7615413 82 - 24565398 GAUUGAGCCAUUGUCACCGAUUGUCUUCGAAGCUGGCGCCUGAUAAGCGCCACAAAUUAAAUUAAAUGUGUAUUAUAUAAAA----------------------------- ......((((((.....(((......)))..(.((((((.......)))))))...........)))).))...........----------------------------- ( -14.40, z-score = -0.33, R) >droPer1.super_9 1649574 109 + 3637205 --GUAUGCAAUUGUCACCGAUCGCGUCGGUAAGUGGCGCCUGAUAAGCGUCGCAAAUUAAAUAAAAUACAGUAUGAAAUAUCUUGAGGCAGCUUCUCAGCGAAUGCGAAUG --...(((((((((.((((((...))))))..(((((((.......)))))))..............)))))........((((((((.....)))))).)).)))).... ( -26.80, z-score = -0.18, R) >consensus GAUUAUGCAAUUGUCACCGAUUGCGUGGCAAAGUGGCGCCUGAUAAGCGUCGCAAAUGAAAUUAUAUGCCAUAUGAAGUGCGAGUAAG_G_____________________ ....((((.((((....)))).))))......(((((((.......))))))).......................................................... (-13.12 = -12.66 + -0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:26 2011