| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,563,876 – 12,563,942 |
| Length | 66 |
| Max. P | 0.812702 |
| Location | 12,563,876 – 12,563,942 |
|---|---|
| Length | 66 |
| Sequences | 7 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 63.25 |
| Shannon entropy | 0.74446 |
| G+C content | 0.57667 |
| Mean single sequence MFE | -20.89 |
| Consensus MFE | -9.47 |
| Energy contribution | -9.40 |
| Covariance contribution | -0.07 |
| Combinations/Pair | 1.80 |
| Mean z-score | -0.81 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.812702 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12563876 66 - 24543557 GCAGAGUGGCUGGCUCAAACUAAGCCGGUCGGUUG----GUCGGUCACCCAACUGU-CUGUCAGUUCCCAG (((((..((((((((.......))))))))(((((----(........)))))).)-)))).......... ( -23.40, z-score = -1.75, R) >droSim1.chr3L 11947368 70 - 22553184 GCAGAGUGGCUGGCUCGAACUAAGCCGGUCGGUCGGUUGGUCGGUCACCCAACUGU-CUGUCAGUUCCCAG (((((.(((((((((.......)))))))))..(((((((........))))))))-)))).......... ( -25.20, z-score = -1.20, R) >droSec1.super_0 4750288 70 - 21120651 ACAGAGUGGCUGGCUCGAACUAAGCCGGUCGGUUGGUCGGUCGGUCACCCAACUGU-CUGUCAGUUCCCAG ...(.(((((((((.(((....((((....))))..)))))))))))).)(((((.-....)))))..... ( -25.40, z-score = -1.37, R) >droYak2.chr3L 12627131 70 - 24197627 GCAGAGUGACUGGCUCGAACUAAGCCGGUCGGUUGGUCGGUCGGUCACCCAACUGU-CUGUCAGUUCCCAG ...(.(((((((((.(((....((((....))))..)))))))))))).)(((((.-....)))))..... ( -26.00, z-score = -1.62, R) >droEre2.scaffold_4784 12566661 62 - 25762168 GCAGAGUGGCUGGCUCAAACUAAGCCGGUCG--------GUCGGUCACCCAACUGU-CUGUCAGUUCCCAG ...((.(((((((((.......)))))))))--------.))((....))(((((.-....)))))..... ( -20.50, z-score = -1.53, R) >droPer1.super_9 1644667 65 - 3637205 ------GCACUGGGUCUGGUCUGGGGCCUUAGACUGCUCCCCAAACUGUCAGCCGUGUCAACAAUUCUCAG ------((((.((.(.((((.(((((.(.......)..))))).))))..).))))))............. ( -14.10, z-score = 1.19, R) >droWil1.scaffold_181136 2211147 58 + 2313701 GCCGAUUUUUUGGGUCUAACCAACUUGGGUGGU-----GUCUGACUGACCAACAGU-UACUUCA------- ((((.....((((......))))......))))-----...((((((.....))))-)).....------- ( -11.60, z-score = 0.62, R) >consensus GCAGAGUGGCUGGCUCGAACUAAGCCGGUCGGUUGG__GGUCGGUCACCCAACUGU_CUGUCAGUUCCCAG ...(.(((((((((.........................))))))))).)(((((......)))))..... ( -9.47 = -9.40 + -0.07)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:25 2011