| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,545,362 – 12,545,460 |
| Length | 98 |
| Max. P | 0.593206 |
| Location | 12,545,362 – 12,545,460 |
|---|---|
| Length | 98 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 85.22 |
| Shannon entropy | 0.22723 |
| G+C content | 0.54415 |
| Mean single sequence MFE | -31.28 |
| Consensus MFE | -26.05 |
| Energy contribution | -25.49 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.37 |
| Structure conservation index | 0.83 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.593206 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12545362 98 + 24543557 -----UCAAAGUGGCAGGGGCACAAGCAUAUAUAGCAUAUAGCAUAUAUCGCAAACUGGCAACUGGCAAGCGAGAUCAGCGGGUCGGAUGUUAGCCGCAGCCA -----......((((.(.(((....((((((((.((.....)))))))).))....(((((.(((((..((.......))..))))).)))))))).).)))) ( -33.50, z-score = -2.66, R) >droEre2.scaffold_4784 12547039 95 + 25762168 GCAAGGUGAAGUGGCAGGGGCACAGCCAUAUA-GCUGCAAA-------CUGGCAACUGGCAACUGGCAAGCGAGAUCAGCGGGUCGGAUGUUAGCCGCAGCCA ....(((...(((((((..((.((((......-))))....-------...))..))((((.(((((..((.......))..))))).)))).))))).))). ( -32.20, z-score = 0.24, R) >droSec1.super_0 4731902 91 + 21120651 -----CCAAAGUGGCAGGGGCACAAGCAUAUAUAGCAUAUA-------UCGCAAACUGGCAACUGGCAAGCGAGAUCAGCGGGUCGGAUGUUAGCCGCAGCCA -----......((((.(.(((....((((((((...)))))-------).))....(((((.(((((..((.......))..))))).)))))))).).)))) ( -29.70, z-score = -1.54, R) >droSim1.chr3L 11928211 91 + 22553184 -----CCAAAGUGGCAGGGGCACAAGCAUAUAUAGCAUAUA-------UCGCAAACUGGCAACUGGCAAGCGAGAUCAGCGGGUCGGAUGUUAGCCGCAGCCA -----......((((.(.(((....((((((((...)))))-------).))....(((((.(((((..((.......))..))))).)))))))).).)))) ( -29.70, z-score = -1.54, R) >consensus _____CCAAAGUGGCAGGGGCACAAGCAUAUAUAGCAUAUA_______UCGCAAACUGGCAACUGGCAAGCGAGAUCAGCGGGUCGGAUGUUAGCCGCAGCCA ...........((((.(.(((.............((..............))....(((((.(((((..((.......))..))))).)))))))).).)))) (-26.05 = -25.49 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:20 2011