| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,537,556 – 12,537,652 |
| Length | 96 |
| Max. P | 0.744655 |
| Location | 12,537,556 – 12,537,652 |
|---|---|
| Length | 96 |
| Sequences | 7 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 64.52 |
| Shannon entropy | 0.68911 |
| G+C content | 0.40331 |
| Mean single sequence MFE | -21.79 |
| Consensus MFE | -8.32 |
| Energy contribution | -8.31 |
| Covariance contribution | -0.01 |
| Combinations/Pair | 1.64 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.744655 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12537556 96 + 24543557 AAAAGAGAGCAAGAAAAUGAAGAGGACACAGGGAUCCUCUGGGCAGGAUUUGGAUAAGGCC---GACAAGUGGCCAUUAUAUGUGCCAUUUUCGCUUAA ......((((..((((((..((((((........)))))).((((.(......((((((((---(.....))))).)))).).)))))))))))))).. ( -27.50, z-score = -1.91, R) >droSim1.chr3L 11920426 92 + 22553184 ----AAAAAAGAGAAAAUGAAGAGACCAAAAGGAUCCUCUGGGCAGGAUUUGGAUAAGGCC---GACAAGUGGCCAUUAUAUGUGCCAUUUUCGCUUAA ----....(((.(((((((......(((....((((((......)))))))))((((((((---(.....))))).))))......))))))).))).. ( -24.30, z-score = -1.64, R) >droSec1.super_0 4724177 92 + 21120651 ----AAAAAAGAGAAAAUGAAGAGACCAAAAGGAUCCUCCGGACAGGAUUUGGAUAAGGCC---GACAAGUGGCCAUUAUAUGUGCCAUUUUCGCUUAA ----....(((.(((((((......(((....((((((......)))))))))((((((((---(.....))))).))))......))))))).))).. ( -24.30, z-score = -2.23, R) >droEre2.scaffold_4784 12539641 89 + 25762168 -------AAAGUAGAAAAAAGGAGGACAAAAGGAUCCUCUGGGCAGGAUUUGGAUAAGACC---GACAAGUGGCCAUUAUAUGUGCCAUUUUCGCUUAA -------.............((((((........))))))((((.((.(((.....)))))---((.((((((((((...))).))))))))))))).. ( -22.10, z-score = -1.23, R) >droYak2.chr3L 12599904 82 + 24197627 -----------AAAAAAAGAAGAGGA---AAGGAUCCUCUGGGCAGGAUUUGGAUAAGACC---GACAAGUGGCCAUUAUAUGUGCCAUUUUCGCUUAA -----------.........((((((---.....))))))((((.((.(((.....)))))---((.((((((((((...))).))))))))))))).. ( -22.30, z-score = -1.78, R) >droAna3.scaffold_13337 19808111 78 - 23293914 -----------------CAAAAAGA----AGGACAUUAAUUGGCAGGAUUUGGCUAAGGCCAGUGGUAAGUGCAUAGUACAAGUGCCAUUUUCGCUUAA -----------------........----............(((..((..((((....))))((((((.((((...))))...))))))))..)))... ( -16.10, z-score = 0.03, R) >dp4.chrXR_group6 3320000 94 + 13314419 ----UAAUGCGGGAAAAUUAAAGAAUAAAUAUAUACAUAUGUCUAUAGUACGCAUGGAUCUGUUUGCGAGUAUAUGCCCCGU-UUUUUUUUUCCUUUAA ----......(((((((..(((((.....(((((((.(((.......)))((((..........)))).))))))).....)-)))).))))))).... ( -15.90, z-score = -0.23, R) >consensus _____A_AAAGAGAAAAUGAAGAGAACAAAAGGAUCCUCUGGGCAGGAUUUGGAUAAGGCC___GACAAGUGGCCAUUAUAUGUGCCAUUUUCGCUUAA .....................(((.......(((((((......))))))).............((.((((((((((...))).))))))))).))).. ( -8.32 = -8.31 + -0.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:17 2011