| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,522,746 – 12,522,817 |
| Length | 71 |
| Max. P | 0.687466 |
| Location | 12,522,746 – 12,522,817 |
|---|---|
| Length | 71 |
| Sequences | 7 |
| Columns | 77 |
| Reading direction | forward |
| Mean pairwise identity | 60.29 |
| Shannon entropy | 0.77681 |
| G+C content | 0.49754 |
| Mean single sequence MFE | -21.26 |
| Consensus MFE | -9.59 |
| Energy contribution | -9.61 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.56 |
| Mean z-score | -0.54 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.687466 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12522746 71 + 24543557 UGUGCGUCAGUAUGUAUGCACAUAUGCACAUGCACGCACACUUACGCACAUACAGGCAGACAUAACGGCGA------ (((((((.(((.((..((((..........))))..)).))).))))))).....((.(......).))..------ ( -20.40, z-score = -0.63, R) >droAna3.scaffold_13337 12570224 67 + 23293914 UGUUCCCAUGCAUGUGUGUGUGUCUGCAGGCCUCCG-AUGCACAUGCAUGUCC---CGCCCAUACCUCAAA------ ......((((((((((((((.(((....)))...).-)))))))))))))...---...............------ ( -18.50, z-score = -1.27, R) >droEre2.scaffold_4784 12524254 57 + 25762168 UGUGCGUCAGUAUGUAUGCGCCCAUGCACAUGCACGCACA--------------UACAUGCAAGGCGGCGA------ .((.((((.(((((((((.((...(((....))).)).))--------------)))))))..))))))..------ ( -21.40, z-score = -0.30, R) >droYak2.chr3L 12584052 71 + 24197627 UGUGCGUCAGUAUGUAUGCGCCCAUGCACAUGCACGCACACCUAUGCUCGCACAUACAUGCAUGGCGGCGA------ .((.((((((((((((((.((...(((....))).(((......)))..)).))))))))).)))))))..------ ( -26.10, z-score = -0.04, R) >droSec1.super_0 4706846 71 + 21120651 UGUGCGUCAGUAUGUAUGCGCCUAUGCACAUGCACGCACACCUACGCACAUACAGGCAUACAUAACGGCAA------ .....(((..(((((((((.....(((....))).((........))........)))))))))..)))..------ ( -19.90, z-score = 0.15, R) >droSim1.chr3L 11905803 71 + 22553184 UGUGCGUCAGUAUGUAUGCGCCUAUGCACAUGCACGCACACCUACGCACAUACAGGCAUACAUAACGGCAA------ .....(((..(((((((((.....(((....))).((........))........)))))))))..)))..------ ( -19.90, z-score = 0.15, R) >droWil1.scaffold_180916 1121115 77 - 2700594 UGUGUGUAUGUGUGUAGAUACAAGUGAUCUAUCAUAGAUACAAGUAUGUAUCUAUAUAUACAUAGAUAUAUCACCGA (((((.((((((((((((((((..(((((((...))))).))....)))))))))..))))))).)))))....... ( -22.60, z-score = -1.87, R) >consensus UGUGCGUCAGUAUGUAUGCGCCUAUGCACAUGCACGCACACCUACGCACAUACAGACAUACAUAACGGCAA______ (((((((..(((((..((((....))))))))))))))))..................................... ( -9.59 = -9.61 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:17 2011