| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,062,828 – 5,062,923 |
| Length | 95 |
| Max. P | 0.733797 |
| Location | 5,062,828 – 5,062,923 |
|---|---|
| Length | 95 |
| Sequences | 8 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 76.98 |
| Shannon entropy | 0.49313 |
| G+C content | 0.64832 |
| Mean single sequence MFE | -27.06 |
| Consensus MFE | -15.53 |
| Energy contribution | -16.30 |
| Covariance contribution | 0.77 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.733797 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5062828 95 + 23011544 CUCGCACACGGCAUCCACAACGCCCACACGCAUUCCACAUCCCGCCGUGGCGCGUUUCCGGCGUUCCGCUUCUCUGCGCCUGCGCGGGAAUCCCG- (((((.((.(((......((((((...((((...((((........)))).))))....))))))..((......))))))).))))).......- ( -34.90, z-score = -2.33, R) >droSim1.chr2L 4898425 95 + 22036055 CUCGCACACGGCAUCCACAACGCCCACACGCAUUCCACAUCCCGCCGUGGCGCGUUUCCGGCGUUCCGCUUCCCUGCGCCUGCGCGGGAAUCCCG- (((((.((.(((......((((((...((((...((((........)))).))))....))))))..((......))))))).))))).......- ( -34.90, z-score = -2.19, R) >droSec1.super_5 3149834 95 + 5866729 CUCGCACACGGCAUCCACAACGCCUACACGCAUUCCACAUCCCGCCGUGGCGCGUUUCCGGCGUUCCGCUUCCCUGCGCCUGCGCGGGAAUCCCG- (((((.((.(((......((((((...((((...((((........)))).))))....))))))..((......))))))).))))).......- ( -34.90, z-score = -2.32, R) >droYak2.chr2L 11862114 95 - 22324452 CUCGCACACGGCAUCCACAACGCCCACACGCAUUCCACAUCCCGCCGUGGCUCGUUUCCGGCGUUCCGCAUCCCUGCGUCUGCGCGGGAAUCCCG- ...((.((((((.........((......))............))))))))....((((.((((..((((....))))...)))).)))).....- ( -28.80, z-score = -0.90, R) >droEre2.scaffold_4929 5142565 95 + 26641161 CUCCCACACGGCAUCCACAACGCCCACUCGCAUUCCACAUCCCGCCGUGGCUCGUUUCCGGCGUUCCGCUUCCCUGCGCCUGCGCGGGAAUCCCG- .((((.(.((((......((((((....((....((((........))))..)).....))))))..((......))))).).).))))......- ( -27.70, z-score = -1.24, R) >droAna3.scaffold_12916 13699970 95 + 16180835 CCAACGUGCCGCAUCCACAACACCUACACGAAUUCCACAUCGCUCUGUGGCUCCGUUCCAGCGUUCCGCUUCGAUGCGCCUGCGCGGGAACCCGU- .....(((.......))).........(((....(((((......)))))....(((((.((((..(((......)))...)))).))))).)))- ( -25.30, z-score = -0.35, R) >droPer1.super_10 585847 92 + 3432795 CUCCCACUCGACAUCUACAACCCCCACACGAAUCCCCCAUCCUGCGGUU---UCAUUCCAUCGUUCCGCCUCACUGCGCCUGCGCG-GAACCAAAG .......................((.((.((........)).)).))..---..........((((((((...........).)))-))))..... ( -13.30, z-score = -0.72, R) >droWil1.scaffold_180703 1351328 75 + 3946847 --------------------CACCCACACGAAUACCACAGGCGGAAGUUGUUCCAUUCCAGUGUUCCGCCUCAAUGCGUUUGCGCGAGAACCGAA- --------------------........((........((((((((..((........))...))))))))...((((....)))).....))..- ( -16.70, z-score = -0.13, R) >consensus CUCGCACACGGCAUCCACAACGCCCACACGCAUUCCACAUCCCGCCGUGGCUCGUUUCCGGCGUUCCGCUUCCCUGCGCCUGCGCGGGAAUCCCG_ ..................................((((........)))).....((((.((((..(((......)))...)))).))))...... (-15.53 = -16.30 + 0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:52 2011