| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,488,838 – 12,488,929 |
| Length | 91 |
| Max. P | 0.938608 |
| Location | 12,488,838 – 12,488,929 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 91 |
| Reading direction | forward |
| Mean pairwise identity | 91.34 |
| Shannon entropy | 0.16391 |
| G+C content | 0.43617 |
| Mean single sequence MFE | -25.75 |
| Consensus MFE | -20.60 |
| Energy contribution | -21.47 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.45 |
| SVM RNA-class probability | 0.938608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12488838 91 + 24543557 AAUGGGCAAACAGUUGAGUUUACGAUUUGGCGGCGAUUUGCAUCUGCCUUUCCGGAUUAUCAUGCAGAUUGCAUUUUGCCACAAUUACGAC ..((((((((..((..((((...))))..)).(((((((((((...((.....))......)))))))))))..)))))).))........ ( -27.90, z-score = -2.55, R) >droSim1.chr3L 11871967 91 + 22553184 AAUGGGCAAACAGUUGAGUUUACGAUUUGGCGGCGAUUUGCAUCUGCCUUUCCGGAUUAUCAUGCAGAUUGCAUUUUGCCACAAUUACGAC ..((((((((..((..((((...))))..)).(((((((((((...((.....))......)))))))))))..)))))).))........ ( -27.90, z-score = -2.55, R) >droSec1.super_0 4672692 91 + 21120651 AAUGGGCAAACAGUUGAGUUUACGAUUUGGCGGCGAUUUGCAUCUGCCUUUCCGGAUUAUCAUGCAGAUUGCAUUUUGCCACAAUUACGAC ..((((((((..((..((((...))))..)).(((((((((((...((.....))......)))))))))))..)))))).))........ ( -27.90, z-score = -2.55, R) >droYak2.chr3L 12549311 91 + 24197627 AAUGGGCAAACAGUUGAAUUUACGACUCGGCUGCGAUUUGCAUCUGCCUUUCCGGAUUAUCAUGCAGAUUGCAUUUUGCCACAAUUACGAC ..((((((((.((((((.........))))))(((((((((((...((.....))......)))))))))))..)))))).))........ ( -27.00, z-score = -2.83, R) >droEre2.scaffold_4784 12485512 88 + 25762168 AAUGGGCAAACAGUUGAAUUUACGACUCGG---CGAUUUGCAUCUGCCUUUCCGGAUUAUCAUGCAGAUUGCAUUUUGCCACAAUUACGAC ..((((((((((((((......))))).)(---((((((((((...((.....))......)))))))))))..)))))).))........ ( -26.30, z-score = -3.19, R) >droAna3.scaffold_13337 12538565 89 + 23293914 AAUAGACGACCCUACGAGUUUACGAUCCGU--AAGAUUUGCAUUUGCCUUUCCGGAUUAUCAUGCAGAUUGCAUUUUGCCACAAUUACGGC ..(((((..........)))))....((((--(((((((((((...((.....))......)))))))))((.....)).....)))))). ( -17.50, z-score = -1.06, R) >consensus AAUGGGCAAACAGUUGAGUUUACGAUUCGGCGGCGAUUUGCAUCUGCCUUUCCGGAUUAUCAUGCAGAUUGCAUUUUGCCACAAUUACGAC ....((((((..((((((((...)))))))).(((((((((((...((.....))......)))))))))))..))))))........... (-20.60 = -21.47 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:13 2011