| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,480,103 – 12,480,205 |
| Length | 102 |
| Max. P | 0.513322 |
| Location | 12,480,103 – 12,480,205 |
|---|---|
| Length | 102 |
| Sequences | 12 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 76.70 |
| Shannon entropy | 0.49072 |
| G+C content | 0.53892 |
| Mean single sequence MFE | -35.01 |
| Consensus MFE | -14.32 |
| Energy contribution | -13.92 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.04 |
| SVM RNA-class probability | 0.513322 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12480103 102 - 24543557 CACGGCAUCUACAUAGACGCCUGGAAGUCCCCCAUUUUCUUUCCCUCGCUGUCCACCAAGUGGGA---CGAUGG------AUCCGGUGAGGGUACGAUAGAUAUACCGCUC ..(((.(((((....(((........)))........((...(((((((((((((((.....)).---...)))------)..)))))))))...)))))))...)))... ( -27.40, z-score = 0.55, R) >droSim1.chr3L 11862117 102 - 22553184 CACGGCAUCUACAUAGAUGCCUGGAAGUCCCCCAUCUUCUUUCCCUCGCUGUCCACCAAGUGGGA---CGAUGG------AUCCGGCGAGGGUACGAUAGAUAUUCCGCUC ...(((((((....))))))).((((.......((((((...(((((((((((((((.....)).---...)))------)..)))))))))...)).)))).)))).... ( -37.20, z-score = -2.12, R) >droSec1.super_0 4663720 102 - 21120651 CACGGCAUCUAUAUAGAUGCCUGGAAGUCCCCCAUCUUCUUUCCCUCGCUGUCCACCAAGUGGGA---CGAUGG------AUCCGGCGAGGGUACGAUAGAUAUUCCUCUC ...(((((((....))))))).((((.......((((((...(((((((((((((((.....)).---...)))------)..)))))))))...)).)))).)))).... ( -36.70, z-score = -2.09, R) >droYak2.chr3L 12539500 102 - 24197627 CACGGCAUCUACAUUGAUGCCUGGAAGUCGCCCAUCUUCUUUCCCUCCCUCUCCACCAAAUGGGA---CGAUGG------CUCCGGCGAGGGAACGAUAGACAUUCCGCUC ...((((((......)))))).(((((((........((.((((((((((((((........)))---.)).(.------...))).))))))).))..))).)))).... ( -34.00, z-score = -1.92, R) >droEre2.scaffold_4784 12476355 102 - 25762168 CACGGCAUCUACAUAGAUGCCUGGAAGUCCCCCAUCUUCUUUCCCUCACUCUCCACUAAAUGGGA---CGAUGG------CUUCGGCGAGGGAACGAUAGACAUUCCGCUC ...(((((((....))))))).(((((((........((.(((((((..(((((.(.....))))---.))..(------(....))))))))).))..))).)))).... ( -36.40, z-score = -3.34, R) >droAna3.scaffold_13337 12530529 102 - 23293914 CAUGGCAUCUACAUAGAUGCCUGGAAGUCGUCCGUUUUCUUCCCAUCGCUCUCCACAAAGUGGGA---CGAUGG------AUCCGGCGAGGGCACCAUCGACAUUCCGCUC ...(((((((....))))))).((((((((...((((((.((((((((.((.((((...))))))---))))))------....)).)))))).....)))).)))).... ( -38.30, z-score = -2.63, R) >dp4.chrXR_group6 3265243 108 - 13314419 CAUGGCAUCUACAUAGAUGCCUGGAAGUCGCCCAACUUCUUCCCGUCGCUCUCUACCAAAUGGGA---CGAUGGUACGGACGCCAAUGAGGGAACAAUAACCAUCCCGCUC ...(((((((....))))))).((((((......))))))..((((((.((((........))))---))))))...............((((..........)))).... ( -32.10, z-score = -1.51, R) >droPer1.super_9 1561668 108 - 3637205 CAUGGCAUCUACAUAGAUGCCUGGAAGUCGCCCAACUUCUUCCCAUCGCUCUCUACCAAAUGGGA---CGAUGGUACGGACGCCAAUGAGGGAACAAUAACCAUCCCGCUC ...(((((((....))))))).((((((......))))))..((((((.((((........))))---))))))...............((((..........)))).... ( -32.50, z-score = -1.95, R) >droWil1.scaffold_180916 1077155 111 + 2700594 CAUGGCAUAUACAUAGAUGCCUGGAAAUCGCCCAUAUUCUUUCCAUCACUAUCCACAAAAUGGGAUGUCGGUGGCGAUAGUCAUGAUGCGGCCACAAUAAAUAUACCGCUG ...(((((........)))))(((..((((((.((...(.((((((.............)))))).)...))))))))..)))....((((..............)))).. ( -25.96, z-score = 0.25, R) >droVir3.scaffold_13049 15959592 105 + 25233164 CAUGGCAUCUAUGUGGACGCCUGGAAGUCGUCCAUUUUCUAUCCAUCGUUGUCCACCAAAUGGGAUGGAGCUGG------CGGCGAUGAAGCUACCAUAUGUGUGCCAUUG .(((((((.(((((((.((((((((.....))))..((((((((....(((.....)))...))))))))..))------))((......))..))))))).))))))).. ( -40.40, z-score = -2.56, R) >droMoj3.scaffold_6680 6077122 105 - 24764193 CACGGCAUCUAUGUGGAUGCCUGGAAGUCGCCCGUGUUCUUCCCAUCGCUAUCCACCAAAUGGGACGGCUCUGG------CGGCGAUGAGGCGACCAUUUGUAUGCCAUUG ...(((((.((.((((.(((((.(..((((((.(.(((..((((((.............)))))).))).).))------))))..).))))).)))).)).))))).... ( -42.72, z-score = -2.43, R) >droGri2.scaffold_15110 19522638 105 + 24565398 CAUGGCAUCUAUGUGGAUGCCUGGAAAUCGCCCAUCUUCUAUCCCUCGCUCUCUACGAAGUGGGAUGGCGCUGG------UGGAGAUCAGGCGACCAUUUGUGUACCCCUG ....((((....((((.((((((...(((..(((((..(((((((.(..((.....)).).)))))))....))------))).))))))))).))))..))))....... ( -36.40, z-score = -1.23, R) >consensus CACGGCAUCUACAUAGAUGCCUGGAAGUCGCCCAUCUUCUUUCCCUCGCUCUCCACCAAAUGGGA___CGAUGG______CUCCGAUGAGGGAACGAUAGAUAUUCCGCUC ...(((((((....))))))).((......(((((........................)))))..................((......)).............)).... (-14.32 = -13.92 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:10 2011