| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,449,167 – 12,449,232 |
| Length | 65 |
| Max. P | 0.890162 |
| Location | 12,449,167 – 12,449,232 |
|---|---|
| Length | 65 |
| Sequences | 3 |
| Columns | 65 |
| Reading direction | forward |
| Mean pairwise identity | 92.82 |
| Shannon entropy | 0.09889 |
| G+C content | 0.54872 |
| Mean single sequence MFE | -21.33 |
| Consensus MFE | -19.49 |
| Energy contribution | -19.17 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.890162 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12449167 65 + 24543557 GUUUCCGAAGGGAAGGCACACAAGUGACCAGGCGUGCACAUCCAUGCGGAGAUCUCUAGUGGAAC ..(((((.(((((.(((((....))).))..(((((......))))).....)))))..))))). ( -19.50, z-score = -1.10, R) >droSim1.chr3L 11830991 65 + 22553184 GUUUCCGAAAGGGAGGCACACAAGUGACCAAGCUGGCACAUCCAUGCGGAGAUCUCCAGUGGAAC ((((((.....))))))......(((.((.....))))).(((((..(((....))).))))).. ( -22.00, z-score = -1.96, R) >droSec1.super_0 4633149 65 + 21120651 GUUUCCGAAAGGGAGACACACAAGUGACCAAGCUGGCACAUCCAUGCGGAGAUCUCCAGUGGAAC ((((((.....))))))......(((.((.....))))).(((((..(((....))).))))).. ( -22.50, z-score = -2.57, R) >consensus GUUUCCGAAAGGGAGGCACACAAGUGACCAAGCUGGCACAUCCAUGCGGAGAUCUCCAGUGGAAC ((((((....)))).))......(((.((.....))))).(((((..(((....))).))))).. (-19.49 = -19.17 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:09 2011