| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,438,921 – 12,439,027 |
| Length | 106 |
| Max. P | 0.644911 |
| Location | 12,438,921 – 12,439,027 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 88.69 |
| Shannon entropy | 0.19084 |
| G+C content | 0.57017 |
| Mean single sequence MFE | -39.48 |
| Consensus MFE | -29.77 |
| Energy contribution | -30.53 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.644911 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12438921 106 + 24543557 ACACGCGCAUGAUGCGUAUCUGGGAUCUCUGGGCUACCCGACAUCUACAUCCCAUCUACACAUGGUCACUU-UGGGUGCAGAACCCAGAGGAGCUGUCUUGUCGUGC ......((((((((.(((..((((((....(((...)))(....)...))))))..))).)(((((..(((-(((((.....))))))))..)))))...))))))) ( -36.30, z-score = -1.24, R) >droSim1.chr3L 11820418 100 + 22553184 ACACGCGCAUGAUGCGUAUCUGGGAUCUCUGGGCUACCCG------ACGUCCCAUCUACAUAUGGUCACUU-UGGGUGCAGAACCCAGAGGAGCUGUCUUGUCGUGC ......(((((((..(((..((((((.((.((....)).)------).))))))..)))..(((((..(((-(((((.....))))))))..)))))...))))))) ( -40.90, z-score = -2.53, R) >droSec1.super_0 4622650 100 + 21120651 ACACGCGCAUGAUGCGUAUCUGGGAUCUCUGGGCUACCCG------ACGUCCCAUCUAACUAUGGUCACUU-UGGGUGCAGAGCCCAGAGGAGCUGUCUUGUCGUGC .((((.(((.(((((...((((((..(((((...((((((------(.((.((((......))))..)).)-)))))))))))))))))...)).))).))))))). ( -40.50, z-score = -2.14, R) >droYak2.chr3L 12497144 99 + 24197627 ACACGCGCAUGAUGCGUAUCUGGGAUCUCUGGGCUACCCG------ACAUCCCAUCCA--UAUGAUGUCUUUCGGGAGGAGAGCCCAGAGGAGCCGUCUUGUCGUGC .((((.(((.(((((...((((((.((((((((...)))(------(((((.......--...))))))........))))).))))))...).)))).))))))). ( -38.70, z-score = -1.51, R) >droEre2.scaffold_4784 12434965 97 + 25762168 ACACGCGCAUGAUGCGUAUCUGGGAUCUCUGGGCUACCCG------GCAUCCCAUCU---UAUGGUCUCUG-CGGCAGCAGAACCCAGAGGAGCCGUCUUGUCGUGC .((((.(((.((((.((...((((((..(((((...))))------).))))))(((---(.(((..((((-(....)))))..))).)))))))))).))))))). ( -41.00, z-score = -2.21, R) >consensus ACACGCGCAUGAUGCGUAUCUGGGAUCUCUGGGCUACCCG______ACAUCCCAUCUA__UAUGGUCACUU_UGGGUGCAGAACCCAGAGGAGCUGUCUUGUCGUGC .((((.(((.(((((...((((((...((((...((((((...........((((......)))).......)))))))))).))))))...)).))).))))))). (-29.77 = -30.53 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:08 2011