| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,434,559 – 12,434,649 |
| Length | 90 |
| Max. P | 0.881661 |
| Location | 12,434,559 – 12,434,649 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 101 |
| Reading direction | reverse |
| Mean pairwise identity | 70.71 |
| Shannon entropy | 0.53582 |
| G+C content | 0.52434 |
| Mean single sequence MFE | -25.05 |
| Consensus MFE | -15.71 |
| Energy contribution | -16.91 |
| Covariance contribution | 1.21 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.05 |
| SVM RNA-class probability | 0.881661 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12434559 90 - 24543557 -CUCCACUUCCAUAAUUCCGAU-UCCGAGCCCGUCUUUUGUGACAGCAAUUAAGCGUCUCAGUCAGCCGGAUUGUUCCGUCUGGAGGCGGGU--------- -.....................-.....((((((((((((.(((.((......))))).))).(((.((((....)))).))))))))))))--------- ( -28.90, z-score = -2.05, R) >droEre2.scaffold_4784 12430579 90 - 25762168 AAUUCCGAUUCCGAACUCC-AU-CUCGAGCCCGUCUUGUGUGACAGCAAUUAACCGUCUCAGUCAGCCGGAUUGUUCCGUCUGGAGGCGGGU--------- ...........(((.....-..-.))).(((((((((.((.(((...........))).))..(((.((((....)))).))))))))))))--------- ( -27.00, z-score = -0.81, R) >droYak2.chr3L 12492432 90 - 24197627 AAUUCCGAUUCCGUACUCC-AU-CUCGAGUCCGUCUUUUGUGACAGCAAUUAACCGUCUCAGUCAGCCGGAUUGUUCCGUCUGGAGGCGGGU--------- ............(.((((.-..-...)))).)(((......))).........(((((((...(((.((((....)))).))))))))))..--------- ( -26.50, z-score = -1.31, R) >droSec1.super_0 4618204 78 - 21120651 -------------AAUUCCGAU-UCCGAGCCCGUCUUUUGUGACAGCAAUUAAGCGUCUCAGUCAGCCGGAUUGUUCCGUCUGGAGGCGGGU--------- -------------.........-.....((((((((((((.(((.((......))))).))).(((.((((....)))).))))))))))))--------- ( -28.90, z-score = -2.61, R) >droSim1.chr3L 11815926 78 - 22553184 -------------AAUUCCGAU-UCCUAGCCCGUCUUUUGUGACAGCAAUUAAGCGUCUCAGUCAGCCGGAUUGUUCCGUCUGGAGGCGGGU--------- -------------.........-.....((((((((((((.(((.((......))))).))).(((.((((....)))).))))))))))))--------- ( -28.90, z-score = -3.08, R) >dp4.chrXR_group6 3219683 87 - 13314419 ------------AUCUCUCCAU-CUCGACCUCGACUU-UGUGACAGCAAUUAACCGUCUCAGUCAGCCGGUUGGGCCAGGGUGGAAGGGAGCAGAUAAGGG ------------((((((((..-.((.((((.((((.-.(.(((...........))).))))).(((.....)))..)))).))..)))).))))..... ( -25.50, z-score = 0.33, R) >droWil1.scaffold_180916 1023123 77 + 2700594 --------UCGAGCAUUUCUCUAAAAGACCUCAACUUUUGUGACAGCAAUUAAACGUCUCAGUCAGCCGGUU-------CCUAGACAUGGGC--------- --------....((.....((((...((((.......(((.(((...........))).)))......))))-------..)))).....))--------- ( -9.62, z-score = 1.77, R) >consensus ________U___GAAUUCCGAU_CCCGAGCCCGUCUUUUGUGACAGCAAUUAACCGUCUCAGUCAGCCGGAUUGUUCCGUCUGGAGGCGGGU_________ .............................((((((((.((.(((...........))).))..(((.((((....)))).))))))))))).......... (-15.71 = -16.91 + 1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:08 2011