Locus 7133

Sequence ID dm3.chr3L
Location 12,426,794 – 12,426,896
Length 102
Max. P 0.890126
window9821 window9822

overview

Window 1

Location 12,426,794 – 12,426,896
Length 102
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 88.21
Shannon entropy 0.22874
G+C content 0.59270
Mean single sequence MFE -37.72
Consensus MFE -29.71
Energy contribution -30.93
Covariance contribution 1.22
Combinations/Pair 1.07
Mean z-score -1.49
Structure conservation index 0.79
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.11
SVM RNA-class probability 0.546853
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 12426794 102 + 24543557
GACUUGGCCGGACGAGAAACCAAUGAAUCCACGUUGGACGCGACUCCACUCAUUUUGGCCAACCACCGCGGUGGU-UACUAGCCAAGUGGGGUGUGCAGUUUG
..((((......))))...((((((......))))))..(((((((((((.....((((.((((((....)))))-)....)))))))))))).)))...... ( -37.40, z-score =  -1.79, R)
>droSim1.chr3L 11807621 102 + 22553184
GACUUGGCCGGACGAGAAACCAAUGAAUCCGCGUUGGACGCGACUCCACUCGUUUUGGCCAACCACCGCGGUGGU-UACUAGCCAAGUGGGGUGUGCAGUUUG
..((((......))))...((((((......))))))..(((((((((((.....((((.((((((....)))))-)....)))))))))))).)))...... ( -37.60, z-score =  -1.21, R)
>droSec1.super_0 4610493 102 + 21120651
GACUUGGCCGGACGAGAAACCAAUGAAUCCGCGUUGGACGCGACUCCACUCGUUUUGGCCAACCACCGCGGUGGU-UACUAGCCAAGUGGGGUGUGCAGUUUG
..((((......))))...((((((......))))))..(((((((((((.....((((.((((((....)))))-)....)))))))))))).)))...... ( -37.60, z-score =  -1.21, R)
>droYak2.chr3L 12483996 102 + 24197627
GACUUGGCCGGACGAGAAACCAAUGAAUCCGCGUUGGACGCGACUCCACUCGUUUUGGCCAACCACCGCGGUGGC-UACUGGCCAGGUGGGGUGUGCAGUUUG
..((((......))))...((((((......))))))..(((((((((((.....((((((.((((....)))).-...)))))))))))))).)))...... ( -39.90, z-score =  -1.09, R)
>droEre2.scaffold_4784 12422176 102 + 25762168
GACUUGGCCGGACGAGAAACCAAUGAAUCCGCGUUGGACGCGACUCCACUCGUUUUGGCCAACCACCGCGGUGGU-UACUGGCCAAGUGGGGUGUGCAGUUUG
..((((......))))...((((((......))))))..(((((((((((.....(((((((((((....)))))-...)))))))))))))).)))...... ( -41.90, z-score =  -2.03, R)
>droAna3.scaffold_13337 22062271 90 - 23293914
GACUUGGCCGGACGAGAAGCCAAUGAAUCCGCGUUGGAGGCAACUCCACUCGCUGCGGCCAACUCCCCCCGAGGUCUCCCCGCCGAUUAG-------------
((((((((((.(((((..((..........))..(((((....))))))))).).)))))))(((.....))))))..............------------- ( -31.90, z-score =  -1.61, R)
>consensus
GACUUGGCCGGACGAGAAACCAAUGAAUCCGCGUUGGACGCGACUCCACUCGUUUUGGCCAACCACCGCGGUGGU_UACUAGCCAAGUGGGGUGUGCAGUUUG
....((((((((((((...((((((......))))))..(......).)))).))))))))(((.((((..((((......)))).))))))).......... (-29.71 = -30.93 +   1.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 2

Location 12,426,794 – 12,426,896
Length 102
Sequences 6
Columns 103
Reading direction reverse
Mean pairwise identity 88.21
Shannon entropy 0.22874
G+C content 0.59270
Mean single sequence MFE -37.75
Consensus MFE -32.99
Energy contribution -32.88
Covariance contribution -0.11
Combinations/Pair 1.23
Mean z-score -1.69
Structure conservation index 0.87
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.09
SVM RNA-class probability 0.890126
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 12426794 102 - 24543557
CAAACUGCACACCCCACUUGGCUAGUA-ACCACCGCGGUGGUUGGCCAAAAUGAGUGGAGUCGCGUCCAACGUGGAUUCAUUGGUUUCUCGUCCGGCCAAGUC
...............((((((((...(-(((((....))))))(((..((((.((((((..((((.....))))..)))))).))))...))).)))))))). ( -35.30, z-score =  -1.38, R)
>droSim1.chr3L 11807621 102 - 22553184
CAAACUGCACACCCCACUUGGCUAGUA-ACCACCGCGGUGGUUGGCCAAAACGAGUGGAGUCGCGUCCAACGCGGAUUCAUUGGUUUCUCGUCCGGCCAAGUC
...............((((((((...(-(((((....))))))(((..((((.((((((..((((.....))))..)))))).))))...))).)))))))). ( -38.60, z-score =  -2.22, R)
>droSec1.super_0 4610493 102 - 21120651
CAAACUGCACACCCCACUUGGCUAGUA-ACCACCGCGGUGGUUGGCCAAAACGAGUGGAGUCGCGUCCAACGCGGAUUCAUUGGUUUCUCGUCCGGCCAAGUC
...............((((((((...(-(((((....))))))(((..((((.((((((..((((.....))))..)))))).))))...))).)))))))). ( -38.60, z-score =  -2.22, R)
>droYak2.chr3L 12483996 102 - 24197627
CAAACUGCACACCCCACCUGGCCAGUA-GCCACCGCGGUGGUUGGCCAAAACGAGUGGAGUCGCGUCCAACGCGGAUUCAUUGGUUUCUCGUCCGGCCAAGUC
...............((.(((((...(-(((((....))))))(((..((((.((((((..((((.....))))..)))))).))))...))).))))).)). ( -37.20, z-score =  -1.29, R)
>droEre2.scaffold_4784 12422176 102 - 25762168
CAAACUGCACACCCCACUUGGCCAGUA-ACCACCGCGGUGGUUGGCCAAAACGAGUGGAGUCGCGUCCAACGCGGAUUCAUUGGUUUCUCGUCCGGCCAAGUC
...............((((((((...(-(((((....))))))(((..((((.((((((..((((.....))))..)))))).))))...))).)))))))). ( -41.30, z-score =  -2.84, R)
>droAna3.scaffold_13337 22062271 90 + 23293914
-------------CUAAUCGGCGGGGAGACCUCGGGGGGAGUUGGCCGCAGCGAGUGGAGUUGCCUCCAACGCGGAUUCAUUGGCUUCUCGUCCGGCCAAGUC
-------------......((((((....)))(((((((((((((..(((((.......)))))..)))))((.((....)).)).)))).)))))))..... ( -35.50, z-score =  -0.17, R)
>consensus
CAAACUGCACACCCCACUUGGCUAGUA_ACCACCGCGGUGGUUGGCCAAAACGAGUGGAGUCGCGUCCAACGCGGAUUCAUUGGUUUCUCGUCCGGCCAAGUC
...............((((((((.....(((((....))))).(((..((((.((((((..((((.....))))..)))))).))))...))).)))))))). (-32.99 = -32.88 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:07 2011