| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,419,876 – 12,419,926 |
| Length | 50 |
| Max. P | 0.970058 |
| Location | 12,419,876 – 12,419,926 |
|---|---|
| Length | 50 |
| Sequences | 9 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 80.52 |
| Shannon entropy | 0.39350 |
| G+C content | 0.30832 |
| Mean single sequence MFE | -7.68 |
| Consensus MFE | -6.53 |
| Energy contribution | -6.19 |
| Covariance contribution | -0.34 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.970058 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12419876 50 - 24543557 UCCAGUCAAUUGAAAUUGUGUAAAUAAUUUCCGUUUUGCUCAAAAAGCCA------ ...........((((((((....)))))))).(((((......)))))..------ ( -7.20, z-score = -2.30, R) >droSim1.chr3L 11800598 50 - 22553184 UCCAGUCAAUUGAAAUUGUGUAAAUAAUUUCCGUUUUGCACAAAAAGCCA------ ...............(((((((((..........))))))))).......------ ( -7.80, z-score = -2.09, R) >droSec1.super_0 4603481 50 - 21120651 UCCAGUCAAUUGAAAUUGUGUAAAUAAUUUCCGUUUUGCACAAAAAGCCA------ ...............(((((((((..........))))))))).......------ ( -7.80, z-score = -2.09, R) >droYak2.chr3L 12476290 50 - 24197627 UCAAGUCAAUUUAAAUUGUGUAAAUAAUUUCCGUUUUGCACAAAAAGCUA------ ...............(((((((((..........))))))))).......------ ( -7.80, z-score = -2.34, R) >droEre2.scaffold_4784 12414737 50 - 25762168 UCCAGUCAAUGUAAAUUGUGCAAAUAAUUUCCGUUUUGCACAAAAAGCUA------ ...............(((((((((..........))))))))).......------ ( -9.80, z-score = -2.85, R) >droAna3.scaffold_13337 22056996 50 + 23293914 UCCAGUCAAUUUAAAUUGUGUAAAUAAUUUCCGUUUUGCACAAAAAGCGA------ ...............(((((((((..........))))))))).......------ ( -7.80, z-score = -2.14, R) >dp4.chrXR_group6 3204547 50 - 13314419 UUUGGCCAAUUCAAAUUGUGCAAAUAAUUUCCGUUUUGUGCAAUAAGCCA------ ..((((........((((..((((..........))))..))))..))))------ ( -9.80, z-score = -1.17, R) >droPer1.super_9 1499276 50 - 3637205 UUUGGCCAAUUCAAAUUGUGCAAAUAAUUUCCGUUUUGUGCAAUAAGCCA------ ..((((........((((..((((..........))))..))))..))))------ ( -9.80, z-score = -1.17, R) >anoGam1.chr3L 39007110 51 + 41284009 -----UCAAUUUCAAAUUGCCAAAUAAUUUCCGUUUUGAUCGAAUGUUAAAAACUA -----............................(((((((.....))))))).... ( -1.30, z-score = 1.10, R) >consensus UCCAGUCAAUUUAAAUUGUGUAAAUAAUUUCCGUUUUGCACAAAAAGCCA______ ...............(((((((((..........)))))))))............. ( -6.53 = -6.19 + -0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:05 2011