| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,413,564 – 12,413,623 |
| Length | 59 |
| Max. P | 0.959576 |
| Location | 12,413,564 – 12,413,623 |
|---|---|
| Length | 59 |
| Sequences | 12 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 85.58 |
| Shannon entropy | 0.31697 |
| G+C content | 0.58108 |
| Mean single sequence MFE | -17.40 |
| Consensus MFE | -15.77 |
| Energy contribution | -16.19 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.67 |
| SVM RNA-class probability | 0.959576 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12413564 59 + 24543557 --GCUGAUCGAUUCGCAGCCAAUCGAUCGGCAGCAUCAUGCAACCGCGCACAGCCUUCAGC --(((((((((((.......))))))))))).((.....))....((.....))....... ( -18.10, z-score = -1.31, R) >droSim1.chr3L 11794358 59 + 22553184 --GCUGAUCGAUUCGCAGCCAAUCGAUCGGCAGCAUCAUGCAACCGCGCACAGCCUUCAGC --(((((((((((.......))))))))))).((.....))....((.....))....... ( -18.10, z-score = -1.31, R) >droSec1.super_0 4597438 59 + 21120651 --GCUGAUCGAUUCGCAGCCAAUCGAUCGGCAGCAUCAUGCAACCGCGCACAGCCUUCUGC --(((((((((((.......))))))))))).((.....))....((.....))....... ( -18.10, z-score = -1.00, R) >droYak2.chr3L 12469765 59 + 24197627 --GCUGAUCGAUUCGGAGCCAAUCGAUCGGCAGCAUCAUGCAACCGCGCACAGCCUUCAGC --(((((((((((.(....)))))))))))).((.....))....((.....))....... ( -19.50, z-score = -1.56, R) >droEre2.scaffold_4784 12408727 59 + 25762168 --GCUGAUCGAUUCGGAGCCAAUCGAUCGGCAGCAUCAUGCAACCGCGCACAGCCCUCAGC --(((((((((((.(....)))))))))))).((.....))....((.....))....... ( -19.50, z-score = -1.54, R) >droAna3.scaffold_13337 22051629 61 - 23293914 GCUCUGAUCGAUUCGGGCCCAAUCGAUCGGCAGCAUCAUGCAACCGCGCACAGCCUUCAGC (((((((((((((.(....))))))))))).)))....(((......)))........... ( -19.50, z-score = -1.36, R) >dp4.chrXR_group6 3198422 59 + 13314419 --GCUGAUCGAUUCAAGCCCAAUCGAUCCGCAGCAUCAUGCAACCGCGCACAGCUCUGGGC --((.((((((((.......)))))))).)).((.....))....((.((......)).)) ( -15.40, z-score = -0.25, R) >droPer1.super_9 1493003 59 + 3637205 --GCUGAUCGAUUCAAGCCCAAUCGAUCCGCAGCAUCAUGCAACCGCGCACAGCUCUGGGC --((.((((((((.......)))))))).)).((.....))....((.((......)).)) ( -15.40, z-score = -0.25, R) >droWil1.scaffold_180916 991993 55 - 2700594 --GCUGAUCGAUUCAAAUUCAAUCGAUCGGCAGCAUCAUGCAACCGCGCUUAGCCCC---- --(((((((((((.......))))))))))).((.....))....((.....))...---- ( -18.10, z-score = -3.16, R) >droVir3.scaffold_13049 15897220 54 - 25233164 --GCUGAUCGAUUU----UCAAUCGAUCGCCAGCAUCAUGCAACCGCGCACAGCCC-CAGC --((((((((((..----...))))))(((..((.....))....)))..))))..-.... ( -12.40, z-score = -1.22, R) >droMoj3.scaffold_6680 6018150 54 + 24764193 --GCUGAUCGAUUU----UCAAUCGAUCGGCAGCAUCAUGCAACCGCGCACAGCCC-CAAC --((((((((((..----...)))))))))).((.....))....((.....))..-.... ( -17.70, z-score = -3.35, R) >droGri2.scaffold_15110 19455439 50 - 24565398 --GCUGAUCGAUUC----UCAAUCGAUCGGCAGCAUCAUGCAACCGCGCACAACCU----- --((((((((((..----...)))))))))).......(((......)))......----- ( -17.00, z-score = -3.34, R) >consensus __GCUGAUCGAUUCG_AGCCAAUCGAUCGGCAGCAUCAUGCAACCGCGCACAGCCCUCAGC ..(((((((((((.......))))))))))).((.....))....((.....))....... (-15.77 = -16.19 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:21:04 2011