| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,058,094 – 5,058,152 |
| Length | 58 |
| Max. P | 0.525009 |
| Location | 5,058,094 – 5,058,152 |
|---|---|
| Length | 58 |
| Sequences | 6 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 68.03 |
| Shannon entropy | 0.59246 |
| G+C content | 0.48755 |
| Mean single sequence MFE | -14.23 |
| Consensus MFE | -8.35 |
| Energy contribution | -6.80 |
| Covariance contribution | -1.55 |
| Combinations/Pair | 1.93 |
| Mean z-score | -0.47 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.525009 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5058094 58 - 23011544 CAGUUGAUGAGUUAAGAUGAUGGAAUCCAGAUCGUACCUCAGCCUAAGCUGGCUGCUU--- (((((..((((.((.(((..(((...))).))).)).)))).....))))).......--- ( -12.30, z-score = -0.02, R) >droSim1.chr2L 4893520 58 - 22036055 CAGUCGAUAAGUUGAGAUGAUGGGGUCCAGACCGAUCCUCAGCCUAAGCUGGCUGCUU--- ((((((.((.((((((..(((.((.......)).))))))))).))...))))))...--- ( -17.30, z-score = -0.65, R) >droSec1.super_5 3145121 58 - 5866729 CAGUCGAUAAGUUGAGAUGAUGGGGUCCAGACCGAUCCUCAGCCUAAGCUGGCUGUUU--- ((((((.((.((((((..(((.((.......)).))))))))).))...))))))...--- ( -17.50, z-score = -1.09, R) >droYak2.chr2L 11857205 55 + 22324452 CAGUUGAUAAGCUGAGAUGAUGGCAUCUACACCACUCCUUACCCUAAGCUGGCUG------ (((((....)))))(((((....))))).(((((...((((...)))).))).))------ ( -9.30, z-score = 0.37, R) >droEre2.scaffold_4929 5137553 55 - 26641161 CAGUUGAUUAACUGAGAUGAUGGGAUCCAGACCAUUCCUUAGCCUGAGCUGGCUC------ (((((.(....(((((..(((((........))))).)))))..).)))))....------ ( -13.40, z-score = -0.43, R) >droVir3.scaffold_12963 17489783 61 + 20206255 CAGUUCAUCAAAGACGAUGUCGACACGAACAUCGACUUGUCGCAUUUGUGAGUUGCUAUUU ((..(((.((((..(((((((((........)))))..))))..)))))))..))...... ( -15.60, z-score = -0.98, R) >consensus CAGUUGAUAAGUUGAGAUGAUGGGAUCCAGACCGAUCCUCAGCCUAAGCUGGCUGCUU___ ((((((....((((((....(((........)))...))))))......))))))...... ( -8.35 = -6.80 + -1.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:51 2011