| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,396,081 – 12,396,173 |
| Length | 92 |
| Max. P | 0.970531 |
| Location | 12,396,081 – 12,396,173 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 86.50 |
| Shannon entropy | 0.26853 |
| G+C content | 0.28637 |
| Mean single sequence MFE | -21.00 |
| Consensus MFE | -10.27 |
| Energy contribution | -10.17 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.08 |
| Mean z-score | -3.42 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.83 |
| SVM RNA-class probability | 0.970531 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12396081 92 + 24543557 -----UUUUGUUUGUUAGCUUUCGUCACAAUUAAUCUCGUUGGCUUCA---------AUUGCAA--UACGAUCUAAG--AGGAAGUGUUACUAAACUUAACAAAUAAAAU -----(((((((((((((.(((.((.(((.((..((((((..((....---------...))..--.)))).....)--)..)).))).)).))).))))))))))))). ( -19.80, z-score = -2.57, R) >droSim1.chr3L 11776982 97 + 22553184 UUUUGUUUUGUUUGUUAGCUUUCGUCACAAUUAAUCUCGUUGGCUUCA---------AUUGCAA--UACGAUCUAAG--AGAAAGUGUUACUAAACUUAACAAAUAAAAU ....((((((((((((((.(((.((.(((.....((((((..((....---------...))..--.)))).....)--).....))).)).))).)))))))))))))) ( -20.40, z-score = -2.42, R) >droSec1.super_0 4580042 96 + 21120651 UUUUGUUU-GUUUGUUAGCUUUCGUCACAAUUAAUCUCGUUGGCUUCA---------AUUGCAA--UACGAUCUAAG--AGAAAGUGUUACUAAACUUAACAAAUAAAAU .....(((-(((((((((.(((.((.(((.....((((((..((....---------...))..--.)))).....)--).....))).)).))).)))))))))))).. ( -18.90, z-score = -1.88, R) >droYak2.chr3L 12451794 91 + 24197627 ------UUUGUUUGUUAGCUUUAGUCACAAUUAAUCUCGUUGGCUUCA---------AUUGCAA--UACGAUCUAAG--AGAAAGUGUUACUAAACUUAACAAAUAAAAU ------((((((((((((.((((((.(((.....((((((..((....---------...))..--.)))).....)--).....))).)))))).)))))))))))).. ( -23.20, z-score = -4.03, R) >droEre2.scaffold_4784 12390965 91 + 25762168 ------UUUGUUUGUUAGCUUUAGUCACAAUUAAUCUCGUUGGCUUCA---------AUUGCAA--UACGAUCUAAG--AGAAAGUGUUACUAAACUUAACAAAUAAAAU ------((((((((((((.((((((.(((.....((((((..((....---------...))..--.)))).....)--).....))).)))))).)))))))))))).. ( -23.20, z-score = -4.03, R) >droAna3.scaffold_13337 22035024 92 - 23293914 -----UUUUGUUUGUUAGCUUUAGUCACAAUUAAUCUCGUUGGCUUCA---------UUUGCAA--UACGAUCUAAG--AGAAAGUGUUACUAAACUUAACAAAUAAAAU -----(((((((((((((.((((((.(((.....((((((..((....---------...))..--.)))).....)--).....))).)))))).))))))))))))). ( -23.90, z-score = -4.14, R) >dp4.chrXR_group6 3178370 97 + 13314419 ------UUUGUUUGUUAGCUUUAGUCACAAUUAAUCUCGUUGGCUUCAUUU---UCUUUUGCAA--UACGAUCUAAG--AGAAAGUGUUACUAAACUUAACAAAUAAAAU ------((((((((((((.((((((..((((.......))))....(((((---(((((((...--.......))))--))))))))..)))))).)))))))))))).. ( -23.30, z-score = -3.76, R) >droPer1.super_9 1472981 97 + 3637205 ------UUUGUUUGUUAGCUUUAGUCACAAUUAAUCUCGUUGGCUUCAUUU---UCUUUUGCAA--UACGAUCUAAG--AGAAAGUGUUACUAAACUUAACAAAUAAAAU ------((((((((((((.((((((..((((.......))))....(((((---(((((((...--.......))))--))))))))..)))))).)))))))))))).. ( -23.30, z-score = -3.76, R) >droVir3.scaffold_13049 7754257 101 + 25233164 -----UUUUGUUUGUUAGCUUUAGUCACAAUUAAUCUCGUUGGCUUCACUUG--CUCUUCACAAAAUACAAUCUAAG--AAAAAAUGUCACUAAACUUAACAAAUAAAAU -----(((((((((((((.((((((.(((.((..(((.((((..........--..............))))...))--)..)).))).)))))).))))))))))))). ( -18.56, z-score = -3.63, R) >droMoj3.scaffold_6680 6000989 101 + 24764193 -----UUUUGUUUGUUAAUUUUAGUCACAAUUAAUCUCGUUGGCUUCGCUCGCAUCUCUCACAAA-UACAAUCUAAG--AAAAA-UGUCACUAAACUUAACAAAUAAAAU -----(((((((((((((.((((((.(((.........((.(((...))).)).(((........-.........))--)....-))).)))))).))))))))))))). ( -19.53, z-score = -4.92, R) >droGri2.scaffold_15110 19436441 93 - 24565398 -----UUUUGUUUGUUUGCUUUAGUCACACAUAAUCUCGUUGGCUUCA------------ACUUGGUACAAUCUAUGCAAAAAAUUGUCACUAAACUUAACAAAUAAAAU -----(((((((((((...((((((.(((.........((((....))------------)).(((......)))..........))).))))))...))))))))))). ( -16.90, z-score = -2.54, R) >consensus _____UUUUGUUUGUUAGCUUUAGUCACAAUUAAUCUCGUUGGCUUCA_________AUUGCAA__UACGAUCUAAG__AGAAAGUGUUACUAAACUUAACAAAUAAAAU ......((((((((((((.(((.((.(((.........((((..........................)))).............))).)).))).)))))))))))).. (-10.27 = -10.17 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:59 2011