Locus 7124

Sequence ID dm3.chr3L
Location 12,383,248 – 12,383,349
Length 101
Max. P 0.836369
window9810

overview

Window 0

Location 12,383,248 – 12,383,349
Length 101
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 91.28
Shannon entropy 0.14441
G+C content 0.47876
Mean single sequence MFE -28.24
Consensus MFE -24.48
Energy contribution -25.12
Covariance contribution 0.64
Combinations/Pair 1.04
Mean z-score -1.82
Structure conservation index 0.87
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.86
SVM RNA-class probability 0.836369
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 12383248 101 + 24543557
AAUUGGAGAUGAACUGGAGAGCACUUGCCAAAGAUAGACGAGACCGGACCCGGAAAAACUGGUAAACUGGCUUUCAAGUUCAAGUGCAUG----GCAAUCGCUCG
.....(((.((((((.((((((..((((((..(.....)....(((....)))......))))))....)))))).))))))..(((...----)))....))). ( -27.20, z-score =  -1.08, R)
>droEre2.scaffold_4784 12378241 96 + 25762168
AAAUGGAGAUGAAC--GAGAGCACUUGCCAAAGAUAGACGAGACCGGACCCGGAAAA-CUGGUAA--UUGCUUUCAAGUUCAAGUGCAUG----GCAAUCACUCA
.....(((.(((((--(((((((.((((((..(.....)....(((....)))....-.))))))--.)))))))..)))))..(((...----)))....))). ( -26.70, z-score =  -1.99, R)
>droYak2.chr3L 12438508 100 + 24197627
AAAUGGAGAUGAAC--GAGAGCACUUGCCAAAGAUAGACGAGACCGGACCCGGAAAA-CUGGUAA--UUGCUCUCAAGUUCAAGUGCAUGCAUGGCAAUCACCCA
...(((...(((((--(((((((.((((((..(.....)....(((....)))....-.))))))--.)))))))..))))).(((..(((...)))..)))))) ( -30.40, z-score =  -2.61, R)
>droSec1.super_0 4567084 101 + 21120651
AAAUGGAGAUGAACUGGAGAGCAUUUGCCAAAGAUAGACGAGACCGGACCCGGAAAAACAGGUAAACUGGCUUUCAAGUUCAAGUGCAUG----GCAAUCGCUCG
..(((.(..((((((.((((((.((((((...(.....)....(((....))).......))))))...)))))).))))))..).)))(----((....))).. ( -27.80, z-score =  -1.58, R)
>droSim1.chr3L 11764050 101 + 22553184
AAAUGGAGAUGAACUGGAGAGCACUUGCCAAAGAUAGACGAGACCGGACCCGGAAAAACAGGUAAACUGGCUUUCAAGUUCAAGUGCAUG----GCAAUCGCGCG
.........((((((.((((((.((((.(.......).)))).(((....))).....(((.....))))))))).)))))).((((((.----...)).)))). ( -29.10, z-score =  -1.86, R)
>consensus
AAAUGGAGAUGAACUGGAGAGCACUUGCCAAAGAUAGACGAGACCGGACCCGGAAAAACUGGUAAACUGGCUUUCAAGUUCAAGUGCAUG____GCAAUCGCUCG
.....(((.((((((.((((((..(((((...(.....)....(((....))).......)))))....)))))).))))))..(((.......)))....))). (-24.48 = -25.12 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:57 2011