| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,381,259 – 12,381,376 |
| Length | 117 |
| Max. P | 0.787263 |
| Location | 12,381,259 – 12,381,376 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 85.97 |
| Shannon entropy | 0.25071 |
| G+C content | 0.33437 |
| Mean single sequence MFE | -23.36 |
| Consensus MFE | -15.28 |
| Energy contribution | -15.96 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.787263 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12381259 117 + 24543557 UACAGAUACUUUCUUUGUA---UCUUCAAGAUAUUUCCUUUGUUUUCUGGUACGCAGUUUUAUAUCUUGAACAUGCUCAUCGAGUAUUCAUUUUCGCAAGAGUGCUCGUAUAUUUUCGAU .....((((.......(((---(.((((((((((...((.(((........))).))....)))))))))).)))).....((((((((..........))))))))))))......... ( -26.40, z-score = -2.78, R) >droSim1.chr3L 11761978 116 + 22553184 -ACGUAUACUUUCUUUGUA---UCUUCAAGAUAUUUUCUUUGUUUUCUAGUACGCAGCUUUUUAUCUUGAACAUGCUCAUCGAGUAUUCAUUUUCGCAAGAGUGCUCGUAUAUUUUCGAU -..((((((.......(((---(.(((((((((....((.(((........))).)).....))))))))).)))).....((((((((..........))))))))))))))....... ( -27.10, z-score = -3.68, R) >droSec1.super_0 4565042 116 + 21120651 -ACAGAUACUUCCUUUGUA---UCUUCAAGAUAUUUUCUUUGUUUUCUAGCACGCAGUUUUUUAUCUUGAACAUGCUCAUCGAGUAUUCAUUUUGGCAAGAGUGCUCGUAUAUUUAUGAU -..((((((.......)))---)))((((((((....((.(((........))).)).....)))))))).((((.....(((((((((..........)))))))))......)))).. ( -26.70, z-score = -2.73, R) >droYak2.chr3L 12436525 120 + 24197627 CAUAGAUACAUUCUUUGUUUAAUGUACAAGAUUUCUCCUUUGUUUUCUAGUACGCAGUUUUUUAUCUUGAACAUACUCAUCGAGUAUUCAUUUUUCCAAGAGUGUUUGCACAUCUUCGAU ....(..((((((((.(...((((..((((((.....((.(((........))).))......))))))...((((((...)))))).))))...).))))))))...)........... ( -19.80, z-score = -1.21, R) >droEre2.scaffold_4784 12376341 120 + 25762168 CACAGAUUCCUUCCUUGUACAUUGUUCCAGAUUUCUCCUUUGUUUUCUAGUACGCAGUUUUUUAUCUUGUACAUACCCAUCGAGUAUUCAUUUUCGCAAGAGUGCUCGUAAAUUUUCGAU ...............((((((.......((((.....((.(((........))).))......)))))))))).......(((((((((..........)))))))))............ ( -16.81, z-score = -0.90, R) >consensus _ACAGAUACUUUCUUUGUA___UCUUCAAGAUAUUUCCUUUGUUUUCUAGUACGCAGUUUUUUAUCUUGAACAUGCUCAUCGAGUAUUCAUUUUCGCAAGAGUGCUCGUAUAUUUUCGAU ........................(((((((((....((.(((........))).)).....))))))))).........(((((((((..........)))))))))............ (-15.28 = -15.96 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:56 2011