| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,376,172 – 12,376,265 |
| Length | 93 |
| Max. P | 0.989210 |
| Location | 12,376,172 – 12,376,265 |
|---|---|
| Length | 93 |
| Sequences | 8 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 82.64 |
| Shannon entropy | 0.34210 |
| G+C content | 0.40116 |
| Mean single sequence MFE | -24.51 |
| Consensus MFE | -19.67 |
| Energy contribution | -18.51 |
| Covariance contribution | -1.15 |
| Combinations/Pair | 1.24 |
| Mean z-score | -2.36 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.36 |
| SVM RNA-class probability | 0.989210 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12376172 93 + 24543557 UCUCGCUUUAAGCCAAAAAAUGCAAACUGUUUGG-UAAUAAACAAGAAAAACGGAAGUCAUUUUGGCAAUCGGGCUAAUUCUUUUGGCCCACAU ...........(((((((.........((((((.-...))))))......((....))..)))))))....(((((((.....))))))).... ( -25.40, z-score = -2.98, R) >droSim1.chr3L 11756638 92 + 22553184 UCCCGCUUAAAGCC-AAAAAUGCAAACUGUUUGG-UAAUAAACAAGAAAAACGGAAGUCAUUUUGGCAAUCGGGCUAAUUCUUUUGGCCCACAU ...........(((-((((........((((((.-...))))))......((....))..)))))))....(((((((.....))))))).... ( -25.40, z-score = -2.55, R) >droSec1.super_0 4560126 93 + 21120651 UCCCGCUUUAAGCCAAAAAAUGCAAACUGUUUGG-UAAUAAACAAGAAAAACGGAAGUCAUUUUGGCAAUCGGGCUAAUUCUUUUGGCCCACAU ...........(((((((.........((((((.-...))))))......((....))..)))))))....(((((((.....))))))).... ( -25.40, z-score = -2.47, R) >droYak2.chr3L 12431504 93 + 24197627 UCUCGCUUAAAGCCUAAAAAUGCAAACUGUUUGG-UAAUAAACAAGAAAAACGGAAGUCAUUUUGGCAAUCGGGCUAAUUCUUUUGGCCCACAU ...........(((..((((((.....((((((.-...))))))......((....)))))))))))....(((((((.....))))))).... ( -23.10, z-score = -2.29, R) >droEre2.scaffold_4784 12371324 93 + 25762168 UCUCGUUUAAAGCCCAAAAAUGCAUACUGUUUGG-UAAUAAACAAGGAAAACGGAAGUCAUUUUGGCAAUCGGGCUAAUUCUUUUGGCCCACAU ...........(((..((((((.....((((((.-...))))))......((....)))))))))))....(((((((.....))))))).... ( -23.10, z-score = -1.78, R) >droAna3.scaffold_13337 22017365 91 - 23293914 CGGCGCUUUAAGCCCAAAAAUGCAAACUGUUUGGGUAAUAAACAAG---AAUGGAAGUCAUUUCGGCAAUCGGGCUAAUUCCUUUAGCCCACAU ....(((....(((((((...(....)..))))))).........(---((((.....))))).)))....(((((((.....))))))).... ( -23.30, z-score = -1.18, R) >dp4.chrXR_group6 3156613 80 + 13314419 ----------AGCCGAAUAAUGCAAACGGUUUAG-UAAUAAACCAG---AAUGGGUGUCCAUUUGGCUGCCAGGCUAAUUCUCUUAGCCCACAA ----------((((.............((((((.-...)))))).(---(((((....))))))))))....((((((.....))))))..... ( -25.20, z-score = -2.56, R) >droPer1.super_9 1452714 80 + 3637205 ----------AGCCGAAUAAUGCAAACGGUUUAG-UAAUAAACCAG---AAUGGGUGUCCAUUUGGCUACCAGGCUAAUUCUCUUAGCCCACAA ----------((((.............((((((.-...)))))).(---(((((....))))))))))....((((((.....))))))..... ( -25.20, z-score = -3.09, R) >consensus UCUCGCUUAAAGCCAAAAAAUGCAAACUGUUUGG_UAAUAAACAAGAAAAACGGAAGUCAUUUUGGCAAUCGGGCUAAUUCUUUUGGCCCACAU ...........(((.(((.........((((((.....))))))......((....))..))).)))....(((((((.....))))))).... (-19.67 = -18.51 + -1.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:54 2011