| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,345,193 – 12,345,276 |
| Length | 83 |
| Max. P | 0.913785 |
| Location | 12,345,193 – 12,345,276 |
|---|---|
| Length | 83 |
| Sequences | 5 |
| Columns | 84 |
| Reading direction | forward |
| Mean pairwise identity | 92.71 |
| Shannon entropy | 0.12835 |
| G+C content | 0.48199 |
| Mean single sequence MFE | -24.16 |
| Consensus MFE | -22.44 |
| Energy contribution | -22.88 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.913785 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12345193 83 + 24543557 ACUGUGGUUUUCCCCCUGAAAGCGAGAGCAUUUCCGGUUACCUGUCAUUAGUCCACAAUGGAGUACAUUUUGCAGCCAAAGCC- .....((((((...((.((((((....)).)))).))....((((...((.(((.....))).))......))))..))))))- ( -17.50, z-score = -0.23, R) >droSim1.chr3L 11723443 83 + 22553184 UCUGUGGUUUUCACACUGAAAGCGAGAGCAUUUCCGGUUACCUGUCAUUAGGCCACAAUGGAGUACAUUUUGCAGCCACAGUC- .(((((((((((.....))))((((((....((((.((..((((....))))..))...))))....)))))).)))))))..- ( -26.10, z-score = -2.58, R) >droSec1.super_0 4529341 83 + 21120651 UCUGUGGUUUUCACACUGAAAGCGAGAGCAUUUCCGGUUACCUGUCAUUAGGCCACAAUGGAGUACAUUUUGCAGCCACAGCC- .(((((((((((.....))))((((((....((((.((..((((....))))..))...))))....)))))).)))))))..- ( -25.90, z-score = -2.40, R) >droYak2.chr3L 12400523 84 + 24197627 UCUGUGGUUUUCACACUGAAAGCGAGAGCUCUUCCGGUUACCUGUCAUUAGGCCACAAUGGAGUACAUUUUGCAGCCACGGACG ((((((((((((.....))))(((((((((((....((..((((....))))..))...)))))...)))))).)))))))).. ( -27.60, z-score = -2.43, R) >droEre2.scaffold_4784 12340550 84 + 25762168 UCUGUGGUUUUGACACUAAAAGCGAGAGCUCUUCCGGUUACCUGUCAUUAGGCCACAAUGGAGUACAUUUUGCAGCCACAGCUG .(((((((((((....)))).(((((((((((....((..((((....))))..))...)))))...)))))).)))))))... ( -23.70, z-score = -1.17, R) >consensus UCUGUGGUUUUCACACUGAAAGCGAGAGCAUUUCCGGUUACCUGUCAUUAGGCCACAAUGGAGUACAUUUUGCAGCCACAGCC_ .(((((((((((.....))))((((((....((((.((..((((....))))..))...))))....)))))).)))))))... (-22.44 = -22.88 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:51 2011