| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,324,434 – 12,324,526 |
| Length | 92 |
| Max. P | 0.859706 |
| Location | 12,324,434 – 12,324,526 |
|---|---|
| Length | 92 |
| Sequences | 9 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 72.81 |
| Shannon entropy | 0.50588 |
| G+C content | 0.47614 |
| Mean single sequence MFE | -27.33 |
| Consensus MFE | -14.56 |
| Energy contribution | -14.60 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.859706 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12324434 92 + 24543557 ---------CUCGCAUGCAUGACAGCCUCAAAAUAGGCAACACUUUUCAGCUGA---------GUUGCAACGAAAGUGUUGCUGG-GGAAAACUUUUGCGAAUUUCCCUCC- ---------.(((((..........(((((......(((((((((((..((...---------...))...))))))))))))))-))........)))))..........- ( -26.87, z-score = -1.64, R) >droGri2.scaffold_15110 19368675 81 - 24565398 -------------------UGCCCGCCCGAAAGUAGGCAGCACUUUUUAGCAGCUU-------GCAACAACGAAAGUGUUGCUGG---CAAACUUU-ACGAAAUU-CUGGGC -------------------.((((((((....)..))).((........)).(((.-------((((((.(....))))))).))---).......-........-..)))) ( -28.40, z-score = -2.15, R) >droMoj3.scaffold_6680 5932255 86 + 24764193 ----------CACUCAUUGCAGGCGCCUCGAAGUAGGCAACACUUUUUAGCAGCU-----------GCAACGAAAGUGUUGCUGG---CAAACUUU-ACGAAAUU-CUGGCC ----------......((((.(((((((......))))(((((((((..((....-----------))...)))))))))))).)---))).....-........-...... ( -23.60, z-score = -0.46, R) >droWil1.scaffold_180949 2262340 86 - 6375548 ------------CUCUUCAGCGUAGCCUCAAAGUAGGCAACAGUUUUUAGCAGCU-----------GCAACGAAAGUGUUGCUGG---AAAACUUUUGCAAAAUUUCUGGCC ------------............(((..(((....((((.(((((((..((((.-----------(((.(....)))).)))))---)))))).))))....)))..))). ( -26.30, z-score = -1.59, R) >droAna3.scaffold_13337 21969035 111 - 23293914 UGCACAAGUCAGCCAUGCGAGACAGCCAGAAAAUAGGCAACACUUUUCGGCAGAAGCUUUCCAGCAUCAAGGAAAGUGUUGCCGGUGGAAAAGUUUUGCGAAUUUCCCCCU- .((........))..((((((((..(((.......(((((((((((((....((.(((....))).))..)))))))))))))..)))....))))))))...........- ( -33.60, z-score = -1.74, R) >droEre2.scaffold_4784 12320263 91 + 25762168 ---------CUCGCAUGUAUGACAGCCUCAAAAUAGGCAACACUUUUCAGCUGA---------GUUGCAACGGAAGUGUUGCUGG-GGAAA-CUUUUGCGAAUUUCCCUCC- ---------.(((((..........(((((......(((((((((((..((...---------...))...))))))))))))))-))...-....)))))..........- ( -26.03, z-score = -1.27, R) >droYak2.chr3L 12379244 92 + 24197627 ---------CUCGCACAUAUGACAGCCUCAAAAUAGGCAACACUUUUCAGCUGA---------GCUGCAACGAAAGUGUUGCUGG-GGAAAACUUUUGCGAAUUUCCCUCC- ---------.(((((..........(((((......(((((((((((((((...---------))))....))))))))))))))-))........)))))..........- ( -26.97, z-score = -2.19, R) >droSec1.super_0 4509309 92 + 21120651 ---------CUCGCAUGCAUGACAGCCUCAAAAUAGGCAACACUUUUCAGCUGA---------GCUGCAACGAAAGUGUUGCUGG-GGAAAACUUUUGCGAAUUUCCCUCC- ---------.(((((..........(((((......(((((((((((((((...---------))))....))))))))))))))-))........)))))..........- ( -27.67, z-score = -1.78, R) >droSim1.chr3L 11702768 92 + 22553184 ---------CUCGCCUGCAUGACAGCCUCAAAAUAGGCAACACUUUUCAGCUGA---------GCUGCAACGAAAGUGUUGCUGG-GGAAAACUUUUGCGAAUUUCCCUCC- ---------.(((((((.....)))(((((......(((((((((((((((...---------))))....))))))))))))))-)).........))))..........- ( -26.50, z-score = -1.33, R) >consensus _________CUCGCAUGCAUGACAGCCUCAAAAUAGGCAACACUUUUCAGCUGA_________GCUGCAACGAAAGUGUUGCUGG_GGAAAACUUUUGCGAAUUUCCCUCC_ ...................................((((((((((((..((...............))...))))))))))))............................. (-14.56 = -14.60 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:48 2011