Locus 7110

Sequence ID	dm3.chr3L
Location	12,277,858 – 12,277,965
Length	107
Max. P	0.924915

overview

Window 3

Location	12,277,858 – 12,277,965
Length	107
Sequences	12
Columns	114
Reading direction	reverse
Mean pairwise identity	73.05
Shannon entropy	0.57205
G+C content	0.50041
Mean single sequence MFE	-27.70
Consensus MFE	-11.51
Energy contribution	-11.51
Covariance contribution	-0.00
Combinations/Pair	1.00
Mean z-score	-1.94
Structure conservation index	0.42
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.31
SVM RNA-class probability	0.924915
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 12277858 107 - 24543557
AAUUAUGGUAGCUAUGGAUACUUUUAUACAAUCCAAAGCUACUUCAAACGCGAGAGAGUGGU-GCGUGCGAAGCAGUUGCGA----CCCGUCGCCGCAGACUCCGCCUUUGC--
......(((((((.(((((...........))))).))))))).((((.(((.(((.(((((-(((.(.(..((....))..----)))).))))))...)))))).)))).-- ( -36.40, z-score =  -2.50, R)
>droAna3.scaffold_13337 21926507 86 + 23293914
AAUUAUGGUAGCUAUGGUUACUUUUAUACAAUCCAAAGCUACUUCAAACAC--GAGAGUGGU-GCGUCGCCACAGACUCCGC---CCUCGCC----------------------
......(((((((.(((...............))).))))))).......(--(((.((((.-..(((......))).))))---.))))..---------------------- ( -25.36, z-score =  -2.97, R)
>droYak2.chr3L 12329797 105 - 24197627
AAUUAUGGUAGCUAUGGAUACUUUUAUACAAUCCAAAGCUACUUCAAACGC--GAGAGUGGU-GCGUGCAAAGCAGUUGCGA----CCCGUCGCCGCAGACUCCGCCUUUCG--
......(((((((.(((((...........))))).)))))))......((--(.((((..(-(((.((...((....))((----....)))))))).)))))))......-- ( -33.50, z-score =  -2.34, R)
>droSec1.super_0 4462593 107 - 21120651
AAUUAUGGUAGCUAUGGAUACUUUUAUACAAUCCAAAGCUACUUCAAACGCGAGAGAGUGGU-GCGUGCGAAGCAGUUGCGA----CCCGUAGCCGCAGACGCCGCCUUUGC--
......(((((((.(((((...........))))).)))))))......((.((((.(((((-(..((((.....((((((.----..))))))))))..))))))))))))-- ( -36.70, z-score =  -2.48, R)
>droSim1.chr3L 11656247 107 - 22553184
AAUUAUGGUAGCUAUGGAUACUUUUAUACAAUCCAAAGCUACUUCAAACGCGAGAGAGUGGU-GCGUGCGAAGCAGUUGCGA----CCCGUCGCCGCAGACGCCGCCUUUGC--
......(((((((.(((((...........))))).)))))))......((.((((.(((((-(..((((........((((----....))))))))..))))))))))))-- ( -36.80, z-score =  -2.28, R)
>droMoj3.scaffold_6680 5885691 92 - 24764193
AAUUAUGGUAGCUAUGGUUACUUUUAUACAAUCCAAAGCUACUUCAAACGCGAAAGCGCACGACCCCCAUCGCCCAGCCCAGUAGCCCCUCC----------------------
......((((((....))))))...............((((((.....(((....)))..(((......)))........))))))......---------------------- ( -18.80, z-score =  -1.88, R)
>droGri2.scaffold_15110 19320570 97 + 24565398
AAUUAUGGUAGCUAUGGUUACUUUUAUACAAUCCAAAGCUACUUCAAACGC--GAAA------GCGUGCG-ACCAGCUCCGA----CCCCCGACCCCCGACAGCCCUCAG----
......(((((((.(((...............))).)))))))((..((((--....------))))..)-)...(((.((.----...........))..)))......---- ( -20.86, z-score =  -2.04, R)
>droVir3.scaffold_13049 7632451 93 - 25233164
AAUUAUGGUAGCUAUGGUUACUUUUAUACAAUCCAAAGCUACUUCAAACGCAAAAGCGCACGACCCCCAUCGCAGGCACCAGGACCUGCCCCC---------------------
......(((((((.(((...............))).))))))).....(((....))).............(((((........)))))....--------------------- ( -21.36, z-score =  -1.55, R)
>droWil1.scaffold_180949 2189774 112 + 6375548
AAUUAUGGUAGCUAUGGUUACUUUUAUACAAUCCAAAGCUACUUCAAACAC--GAGAGUGGUAGAGUGCGAAACCAUUGCGACCAUCCAUCCACCCCUGCCCCCGCCCACCCCA
....(((((.((.((((((..................((.((((....(((--....)))...))))))..)))))).)).)))))............................ ( -21.35, z-score =  -0.89, R)
>droPer1.super_9 922039 106 - 3637205
AAUUAUGGUAGCUAUGGUUACUUUUAUACAAUCCAAAGCUACUUCAAACAC--GAGAGUGGU-GCGUGCCAAGCCGUUGCGA---CCCCAUCGCCACAGACUCCGCCCCCUC--
......(((((((.(((...............))).))))))).......(--(.(((((((-....))).....((.((((---.....)))).))..)))))).......-- ( -25.16, z-score =  -1.11, R)
>dp4.chrXR_group6 2626909 106 - 13314419
AAUUAUGGUAGCUAUGGUUACUUUUAUACAAUCCAAAGCUACUUCAAACAC--GAGAGUGGU-GCGUGCCAAGCCGUUGCGA---CCCCAUCGCCACAGACUCCGCCCCCUC--
......(((((((.(((...............))).))))))).......(--(.(((((((-....))).....((.((((---.....)))).))..)))))).......-- ( -25.16, z-score =  -1.11, R)
>droEre2.scaffold_4784 12272121 96 - 25762168
AAUUAUGGUAGCUAUGGAUACUUUUAUACAAUCCAAAGCUACUUCAAACGC--GAGAGUGGU-GCGUGCGAAGCAGUUGCGA----CCCGUCGCCGCAGACUC-----------
......(((((((.(((((...........))))).))))))).....(((--....))).(-(((.((((.((....))..----....)))))))).....----------- ( -30.90, z-score =  -2.09, R)
>consensus
AAUUAUGGUAGCUAUGGUUACUUUUAUACAAUCCAAAGCUACUUCAAACGC__GAGAGUGGU_GCGUGCGAAGCAGUUGCGA____CCCGUCGCCGCAGACUCCGCC____C__
......(((((((.(((...............))).)))))))....................................................................... (-11.51 = -11.51 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:42 2011