| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,260,396 – 12,260,494 |
| Length | 98 |
| Max. P | 0.510755 |
| Location | 12,260,396 – 12,260,494 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 90.20 |
| Shannon entropy | 0.13504 |
| G+C content | 0.27824 |
| Mean single sequence MFE | -19.40 |
| Consensus MFE | -14.37 |
| Energy contribution | -16.37 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.03 |
| SVM RNA-class probability | 0.510755 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12260396 98 + 24543557 GCUUUUGUAGUAAAACA----GAAAGAUCGUUAAUGAGGAAUAUGAAAGUGUUUUUACUAAAUACAACUUUACCAGAAUCUUUGGCAUAAAGCCAAAAUAAU ..((((((......)))----))).....((.....((((((((....)))))))).......))...............((((((.....))))))..... ( -14.70, z-score = -0.55, R) >droSec1.super_0 4445264 102 + 21120651 ACUUUUGUAGUAAAAAAUUACGAAAGUACGUUAGUGAGGAAUAGGAAAGUGUUUUUACUAAUUACAACUUUAGCAAAAUCUUUGGCAUAAAGCCAAAAUAAU (((((((((((.....)))))))))))..(((((((((.((((......)))))))))))))..................((((((.....))))))..... ( -22.60, z-score = -2.79, R) >droSim1.chr3L 11636419 102 + 22553184 ACUUUUGUAGAAAAAAAUUACGAAAGAACGUUAGUGAGGAAUAGGAAAGUGUUUUUACUAAAAACAACUUUACCAAAAUCUUUGGCAUAAAGCCAAAAUAAU .(((((((((.......))))))))).................((((((((((((.....))))).))))).))......((((((.....))))))..... ( -20.90, z-score = -2.82, R) >consensus ACUUUUGUAGUAAAAAAUUACGAAAGAACGUUAGUGAGGAAUAGGAAAGUGUUUUUACUAAAUACAACUUUACCAAAAUCUUUGGCAUAAAGCCAAAAUAAU .((((((((((.....))))))))))....((((((((.((((......))))))))))))...................((((((.....))))))..... (-14.37 = -16.37 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:42 2011