| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,252,025 – 12,252,117 |
| Length | 92 |
| Max. P | 0.614532 |
| Location | 12,252,025 – 12,252,117 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 72.89 |
| Shannon entropy | 0.47262 |
| G+C content | 0.45762 |
| Mean single sequence MFE | -25.88 |
| Consensus MFE | -16.26 |
| Energy contribution | -17.52 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.02 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.614532 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12252025 92 + 24543557 AUAUCGUGGUGGGUGUGGGUGCGAUUAUCAGCACUGCCGAUAAGCAUGGUGUUUAUACACUCGCUCUAUCGUAAUAUCGCACUAUCGCAAUA-------- .....(((((((.(((((((((........)))))..((((((((..(((((....))))).))).)))))......)))))))))))....-------- ( -31.60, z-score = -2.30, R) >droSim1.chr3L 11627959 84 + 22553184 AUAUCGUGGUGGGUGUGGGUGCCAUUAUCAGCACUGCCGAUAAGCAUGGUGUUUAUACACUCGCUCUAUCGCAAAAUCGCAAUA---------------- .....((((((((.(((((((....(((.((((((((......))..)))))).))))))))))))))))))............---------------- ( -25.30, z-score = -1.20, R) >droSec1.super_0 4436882 84 + 21120651 AUAUCGUGGUGGGUGUGGGUGCGAUUAUCAGCGCUGCCGAUAAGCAUGGUGUUUAUACACUCGCUCUAUCGCAAAAUCGCAGUA---------------- .....((((((((.(((((((....(((((..(((.......))).)))))......)))))))))))))))............---------------- ( -25.60, z-score = -0.57, R) >droYak2.chr3L 12303071 100 + 24197627 AUAUCGUGGUGGGUGUGGGUGCGAUUAUAAGCACUGCCGAUAAGCAUGCUGUUUAUACACUCGCUAUAUCGCUGUAUCGCAGUAUCGCAAUAUCGAAAUA .....(((((((((((.(((((........)))))....((((((.....)))))))))))))))))...((((.....)))).(((......))).... ( -29.30, z-score = -0.45, R) >droEre2.scaffold_4784 12242875 84 + 25762168 AUAUCGCAGUGGGUGUGGGUGCGAUUAUAAGCACUGUCGAUAAGCAUGGUGCUUAUACACACGCUGUAUCGCAAUAUCGGAAUA---------------- .....((((((.((((.(((((........)))))....((((((.....)))))))))).)))))).................---------------- ( -25.60, z-score = -1.09, R) >droAna3.scaffold_13337 21901961 81 - 23293914 ACACAGUCUCCGG-GAGUGUGUAAUUAUUAGCAUUUUCGAUAAGCAGCGUGCUC-UGCGAAUAUCAGUCCACAG-ACCGAAAUA---------------- (((((.((.....-)).)))))............((((((((.((((......)-)))...)))).(((....)-)).))))..---------------- ( -17.90, z-score = -0.51, R) >consensus AUAUCGUGGUGGGUGUGGGUGCGAUUAUCAGCACUGCCGAUAAGCAUGGUGUUUAUACACUCGCUCUAUCGCAAUAUCGCAAUA________________ .......(((((((((.(((((........)))))....((((((.....)))))))))))))))................................... (-16.26 = -17.52 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:41 2011