| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,247,329 – 12,247,391 |
| Length | 62 |
| Max. P | 0.596235 |
| Location | 12,247,329 – 12,247,391 |
|---|---|
| Length | 62 |
| Sequences | 4 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 87.37 |
| Shannon entropy | 0.20739 |
| G+C content | 0.35491 |
| Mean single sequence MFE | -12.62 |
| Consensus MFE | -10.90 |
| Energy contribution | -10.78 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.86 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.596235 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12247329 62 - 24543557 UCUGCGAAGAAGUUUGAAAGUAGCCUAGUUUAGUUUUAGACUUCCUUUUGAGAUUGUAAAAA (((.(((((((((((((((.(((......))).)))))))))))..)))))))......... ( -14.20, z-score = -2.16, R) >droSec1.super_0 4432118 62 - 21120651 UCAGCGGAGAAGUUUAAAAGUAGCCUAGUUUAGUUUUUGACUUCCUUUUGCGAUCGUUAAAA ...(((((((((((.((((.(((......))).)))).))))))..)))))........... ( -12.20, z-score = -0.86, R) >droYak2.chr3L 12298390 59 - 24197627 UCUGCCGAGAAGUUUAAAAGUAGCCUAGUUUAGUUUUAGACUUCCUUUUUAGAUCGUAA--- ((((..(((((((((((((.(((......))).)))))))))).)))..))))......--- ( -13.30, z-score = -2.33, R) >droEre2.scaffold_4784 12238171 62 - 25762168 UCUGCGGAGAAGUUUAAAAGUAGCCUAGUUUAGUUGUAGACUUCCGUUUGGGGUCGUAAAAA .((.((((((((((((.((.(((......))).)).))))))))..)))).))......... ( -10.80, z-score = 0.13, R) >consensus UCUGCGGAGAAGUUUAAAAGUAGCCUAGUUUAGUUUUAGACUUCCUUUUGAGAUCGUAAAAA ..(((((.(((((((((((.(((......))).)))))))))))(......).))))).... (-10.90 = -10.78 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:37 2011