| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,241,089 – 12,241,141 |
| Length | 52 |
| Max. P | 0.550763 |
| Location | 12,241,089 – 12,241,141 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 94.81 |
| Shannon entropy | 0.07064 |
| G+C content | 0.55923 |
| Mean single sequence MFE | -15.18 |
| Consensus MFE | -13.76 |
| Energy contribution | -13.76 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.550763 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12241089 52 + 24543557 CGCACGUUUGCCCCGGAAGUUGUGCUUGGGGGGUAAAAAGGACGAAAGAACG (((...((((((((..(((.....)))..))))))))...).))........ ( -16.30, z-score = -1.30, R) >droSim1.chr3L 11616308 50 + 22553184 CGCACGUUUGCCCCGGAAGUUGUGAU--GGGGGUAAAAAGGACGAAAGGACG ......((((((((............--.))))))))..(..(....)..). ( -14.62, z-score = -1.42, R) >droSec1.super_0 4425998 50 + 21120651 CGCACGUUUGCCCCGGAAGUUGUGAU--GGGGGUAAAAAGGACGAAAGGACG ......((((((((............--.))))))))..(..(....)..). ( -14.62, z-score = -1.42, R) >consensus CGCACGUUUGCCCCGGAAGUUGUGAU__GGGGGUAAAAAGGACGAAAGGACG ......((((((((...............))))))))..(..(....)..). (-13.76 = -13.76 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:37 2011