| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,238,067 – 12,238,141 |
| Length | 74 |
| Max. P | 0.526118 |
| Location | 12,238,067 – 12,238,141 |
|---|---|
| Length | 74 |
| Sequences | 5 |
| Columns | 74 |
| Reading direction | reverse |
| Mean pairwise identity | 94.73 |
| Shannon entropy | 0.09355 |
| G+C content | 0.36590 |
| Mean single sequence MFE | -13.70 |
| Consensus MFE | -11.52 |
| Energy contribution | -11.64 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.84 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.526118 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12238067 74 - 24543557 UCAAAGGAAAUCCUUCUUUUAUACAAAUUCGCAGGAUUAACGCAGUUUCAUGCUGCAAAACGUAUAAGCCAUAA ...((((....))))..(((((((.((((.....))))...(((((.....))))).....)))))))...... ( -14.90, z-score = -2.48, R) >droSim1.chr3L 11613411 74 - 22553184 UCAAAGGAAAUCCCUCUUUUAUACAAAUUCGCAGGAUUAACGCAGUUUCAUGCUGCAAAACGUAUAAGCCAUAA ....(((.....)))..(((((((.((((.....))))...(((((.....))))).....)))))))...... ( -13.40, z-score = -1.85, R) >droSec1.super_0 4423069 74 - 21120651 UCAAAGGAAAUCCCUCUUUUAUACAAAUUCGCAGGAUUAACGCAGUUUCAUGCUGCAAAACGUAUAAGCCAUAA ....(((.....)))..(((((((.((((.....))))...(((((.....))))).....)))))))...... ( -13.40, z-score = -1.85, R) >droYak2.chr3L 12288785 74 - 24197627 UCAAAGGAAAUCCCUCUUUUAUACAAAUUCGCAGGAUUAACGCCGUUCAAUGCUGCAAAACGUAUAAGCUAUAA ....(((.....)))..(((((((......((((.((((((...))).))).)))).....)))))))...... ( -11.20, z-score = -0.83, R) >droEre2.scaffold_4784 12228641 73 - 25762168 UCAAAGGAAAUCCCUUUUUUAUACAAA-UCGCAGGAUUAACGCGGUUCCAUGCUGCAAAACGUAUGAGCUAUAA ..(((((.....)))))(((((((.((-((....))))...(((((.....))))).....)))))))...... ( -15.60, z-score = -1.56, R) >consensus UCAAAGGAAAUCCCUCUUUUAUACAAAUUCGCAGGAUUAACGCAGUUUCAUGCUGCAAAACGUAUAAGCCAUAA .....((....))....(((((((.((((.....))))...(((((.....))))).....)))))))...... (-11.52 = -11.64 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:36 2011