| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,237,088 – 12,237,149 |
| Length | 61 |
| Max. P | 0.938164 |
| Location | 12,237,088 – 12,237,149 |
|---|---|
| Length | 61 |
| Sequences | 7 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 71.54 |
| Shannon entropy | 0.54991 |
| G+C content | 0.50964 |
| Mean single sequence MFE | -20.38 |
| Consensus MFE | -9.87 |
| Energy contribution | -11.53 |
| Covariance contribution | 1.66 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.938164 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12237088 61 - 24543557 ----AGGUGACUGGCUGGAUAACUUUCUGAUUAGUGUGAGAGCACUUUCCAGCUGUUGAGAGCUG ----((....))(((((((.............(((((....))))).)))))))........... ( -18.64, z-score = -1.39, R) >droAna3.scaffold_13337 21888912 51 + 23293914 ----AGGUGACUGGCCGGAUAACUUUCUGAUUAGCGAGAGAGAGCUCUGGCAGGG---------- ----((....)).((((((...((((((........))))))...))))))....---------- ( -17.30, z-score = -1.74, R) >droEre2.scaffold_4784 12227643 57 - 25762168 ----AGGUGACUGGCUGGAUAACUUUCUGAUUAGUGUGAGAGCACUUUCCAGCUGUUGAGA---- ----((....))(((((((.............(((((....))))).))))))).......---- ( -18.64, z-score = -2.13, R) >droYak2.chr3L 12287746 61 - 24197627 AGGUGGCUGGCAGGCUGGAUAACUUUCUGAUUAGUGUGAGAGCACUUUCCAGCUGUUGAGA---- .((..(((((((((..(.....)..))))...(((((....)))))..)))))..))....---- ( -20.20, z-score = -1.30, R) >droSec1.super_0 4422147 61 - 21120651 ----AGGUGACUGGCUGGAUAACUUUCUGAUUAGUGUGAGAGCACUUUCCAGCUGUUGAGAACUG ----((....))(((((((.............(((((....))))).)))))))........... ( -18.64, z-score = -1.90, R) >droSim1.chr3L 11611608 61 - 22553184 ----AGGUGACUGGCUGGAUAACUUUCUGAUUAGUGUGAGAGCACUUUCCAGCUGUUGAGAGCUG ----((....))(((((((.............(((((....))))).)))))))........... ( -18.64, z-score = -1.39, R) >droVir3.scaffold_13049 7594297 56 - 25233164 -------CGGCU-GCCGGUUGCUAUGAGGAUUGCCAUGGCAGC-UGUCCCGGCUGCUGGCAGCUG -------(((((-((((((.(((..((.(.((((....)))).-).))..))).))))))))))) ( -30.60, z-score = -2.88, R) >consensus ____AGGUGACUGGCUGGAUAACUUUCUGAUUAGUGUGAGAGCACUUUCCAGCUGUUGAGA_CUG .......((((.(((((((.............(((((....))))).)))))))))))....... ( -9.87 = -11.53 + 1.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:35 2011