| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,232,069 – 12,232,141 |
| Length | 72 |
| Max. P | 0.726343 |
| Location | 12,232,069 – 12,232,141 |
|---|---|
| Length | 72 |
| Sequences | 8 |
| Columns | 79 |
| Reading direction | forward |
| Mean pairwise identity | 78.05 |
| Shannon entropy | 0.42460 |
| G+C content | 0.48488 |
| Mean single sequence MFE | -18.02 |
| Consensus MFE | -8.32 |
| Energy contribution | -9.79 |
| Covariance contribution | 1.47 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.726343 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12232069 72 + 24543557 -------AUCGCCGCCAUCGACUACGGCAUUGCCCCCAUAGUCAUUCAUUUAACUGUCAAUGCCGUUGUUAUGCUGUGG -------....(((((((.(((.(((((((((.....(((((.(......).)))))))))))))).))))))..)))) ( -21.10, z-score = -2.73, R) >droSim1.chr3L 11606406 70 + 22553184 ---------CAUCGCCAUCGACUACGUCAUUGCCCCCAUAGUCAUUCAUUUAACUGUCAAUGCCGUUGUUAUGCUGUGG ---------(((.((.((.(((.(((.(((((.....(((((.(......).)))))))))).))).))))))).))). ( -12.70, z-score = -0.81, R) >droSec1.super_0 4417175 70 + 21120651 ---------CAUAGCCAUCGACUACGGCAUUGCCCCCAUAGUCAUUCAUUUAACUGUCAAUGCCGUUGUUAUGCUGUGG ---------((((((.((.(((.(((((((((.....(((((.(......).)))))))))))))).))))))))))). ( -24.00, z-score = -4.30, R) >droYak2.chr3L 12282759 70 + 24197627 ---------CAUCGGCAUGGACUACGGCAUUGCCCCCAUAGUCAUUCAUUUAACUGUCAAUGCCGUUGUUAUGCUGUGG ---------((.((((((((...(((((((((.....(((((.(......).))))))))))))))..)))))))))). ( -25.20, z-score = -3.30, R) >droEre2.scaffold_4784 12222735 70 + 25762168 ---------CAUCGGCAUCGACUACGGCAUUGCCCCCAUAGUCAUUCAUUUAACUGUCAAUGCCGUUGUUAUGCUGUGG ---------((.((((((.(((.(((((((((.....(((((.(......).)))))))))))))).))))))))))). ( -25.20, z-score = -4.12, R) >droAna3.scaffold_13337 21884927 64 - 23293914 ---------------CAGGACCAUCGGCAGUGCCCCCAUAGUCAUUCAUUUAACUGUCAAUGCCGAUGUUAUGCUGUGG ---------------(((.(.((((((((.((.....(((((.(......).))))))).))))))))...).)))... ( -15.80, z-score = -0.58, R) >dp4.chrXR_group6 2571890 61 + 13314419 ---------------CAGGAGU--C-GCCUCCCUUCCAGAGUCAUUCAUUUAACUGUCAAUGCCGUUGUUAUGCUGUGG ---------------..((((.--.-..))))...(((.((.(((.....((((.((....)).))))..))))).))) ( -11.90, z-score = -0.49, R) >droGri2.scaffold_15110 19277950 74 - 24565398 AUAACUAACCCCAACCACGACU--CUGCCCCCUGACCAAAGUCAUUCAUUUAACUGUCAAUGCCGUUGUUAUGCGG--- ..................(((.--........((((....))))...........)))....((((......))))--- ( -8.25, z-score = -0.25, R) >consensus _________CAUCGCCAUCGACUACGGCAUUGCCCCCAUAGUCAUUCAUUUAACUGUCAAUGCCGUUGUUAUGCUGUGG ...................(((.(((((((((.....(((((.(......).)))))))))))))).)))......... ( -8.32 = -9.79 + 1.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:34 2011