| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,227,508 – 12,227,574 |
| Length | 66 |
| Max. P | 0.694508 |
| Location | 12,227,508 – 12,227,574 |
|---|---|
| Length | 66 |
| Sequences | 7 |
| Columns | 68 |
| Reading direction | forward |
| Mean pairwise identity | 81.30 |
| Shannon entropy | 0.36874 |
| G+C content | 0.41177 |
| Mean single sequence MFE | -11.11 |
| Consensus MFE | -7.85 |
| Energy contribution | -8.37 |
| Covariance contribution | 0.51 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.36 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.694508 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12227508 66 + 24543557 UUCCAAUUGCCAAUCGAAUUUCC--UCUAAUUUGCCAUCAAUUUGGUUGGCAUUAUCGCUCGUUUCGG .......(((((((((((((...--..............)))))))))))))................ ( -13.63, z-score = -2.01, R) >droSim1.chr3L 11601943 66 + 22553184 UUCCAAUUGCCAAUCGAAUUUCC--UCUAAUUUGCCAUCAAUUUGGUUGGCCUUAUCGCUCGUUUCGG ........((((((((((((...--..............))))))))))))................. ( -12.03, z-score = -1.45, R) >droSec1.super_0 4412636 66 + 21120651 UUCCAAUUGCCAAUCGAAUUUCC--UCUAAUUUGCCAUCAAUUUGGUUGGCCUUAUCGCUCGUUUCGG ........((((((((((((...--..............))))))))))))................. ( -12.03, z-score = -1.45, R) >droYak2.chr3L 12278248 66 + 24197627 UUCCAAUUGCCAAUCGAAUUUCC--UCUAAUUUGCCAUCAAUUUGGUUGGCCUUAUCGCUCGUUUCGG ........((((((((((((...--..............))))))))))))................. ( -12.03, z-score = -1.45, R) >droEre2.scaffold_4784 12217533 66 + 25762168 UUCCAAUUGCCAAUCGAGUUUCC--UCUAAUUUGCCAUCAAUUUGGUUGGCCUUAUCGCUCGUUUCGG ........((((((((((((...--..............))))))))))))................. ( -12.03, z-score = -1.22, R) >droAna3.scaffold_13337 21881169 60 - 23293914 UGCCGAUUGCCAAUCGAAUUUCCC-UCUAAUUUGCCAUCAAUUUCGAUGCCUUUAUCGUCC------- ...((((.....((((((......-.................))))))......))))...------- ( -7.00, z-score = -0.86, R) >droWil1.scaffold_180698 2662880 61 + 11422946 UUCUAAUUGCAAAUCGAAUUUGCAGGGAAAUUCGCCAUAAAUUUCACUUAACCAAUUUCGA------- .............(((((.(((.(((((((((.......)))))).)))...))).)))))------- ( -9.00, z-score = -1.12, R) >consensus UUCCAAUUGCCAAUCGAAUUUCC__UCUAAUUUGCCAUCAAUUUGGUUGGCCUUAUCGCUCGUUUCGG ........((((((((((((...................))))))))))))................. ( -7.85 = -8.37 + 0.51)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:33 2011