Locus 7099

Sequence ID dm3.chr3L
Location 12,212,083 – 12,212,197
Length 114
Max. P 0.884377
window9779 window9780

overview

Window 9

Location 12,212,083 – 12,212,180
Length 97
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 87.78
Shannon entropy 0.21833
G+C content 0.30457
Mean single sequence MFE -21.50
Consensus MFE -15.18
Energy contribution -14.70
Covariance contribution -0.48
Combinations/Pair 1.20
Mean z-score -2.38
Structure conservation index 0.71
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.06
SVM RNA-class probability 0.884377
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 12212083 97 - 24543557
UUUUCCGCUAUUAAACUCUAAUGGCGGUGUUUAAUGGUUGAAAAUUAAAGUUUUUGAAUUAUUACUAUUUCAUUUAGAUUCGG-CCAAUCCGACCACU
....(((((((((.....)))))))))....((((((((.((((.......)))).))))))))(((.......)))..((((-.....))))..... ( -20.10, z-score =  -1.91, R)
>droYak2.chr3L 12262736 97 - 24197627
UUUUCCGCUAUUAAACUCCGAUGGUGGUUUUUAAUGGUCGUAAAUUAAAGUUUGUAAAUUAUUAAUAUUUCAUUUAGUUACGG-CACACUCGACCAGU
....((((((((.......)))))))).......((((((........(((.(((.....(((((........)))))....)-)).))))))))).. ( -20.00, z-score =  -1.76, R)
>droEre2.scaffold_4784 12201878 97 - 25762168
UUUUCCGCUAUUAAACUCUAAUGUUGGCGUUUAAUGGUUGUAAAUUAAAGUUUGUGAAAUAUUAAUAUUUCAUUUAGAUAUGG-AAAAACCGACCUCU
((((((((((((((((.(((....))).))))))))))...........((((((((((((....))))))))..))))..))-)))).......... ( -21.20, z-score =  -2.98, R)
>droSec1.super_0 4397131 98 - 21120651
UUUUCCGCUAUUAAACUCUGAUGGCGGUGUUUAAUGGUUGAAAAUUAAAGUUUUUGAAUUAUUAAUAUUUCAUUUAGAUUCGGUUUAAACCGACCAUU
....(((((((((.....)))))))))...(((((((((.((((.......)))).)))))))))..............(((((....)))))..... ( -23.00, z-score =  -2.75, R)
>droSim1.chr3L 11586131 97 - 22553184
UUUUCCGCUAUUAAACUCUGAUGGCGGUGUUUAAUGGUUGAAAAUUAAAGUUUUUGAAUUAUUAAUAUUUCAUUUAGAUUCGG-GCAAACCGACCUCU
....(((((((((.....)))))))))...(((((((((.((((.......)))).)))))))))..........(((.((((-.....))))..))) ( -23.20, z-score =  -2.48, R)
>consensus
UUUUCCGCUAUUAAACUCUGAUGGCGGUGUUUAAUGGUUGAAAAUUAAAGUUUUUGAAUUAUUAAUAUUUCAUUUAGAUUCGG_CAAAACCGACCACU
....(((((((((.....)))))))))...((((((((..(((((....)))))..).)))))))...............(((......)))...... (-15.18 = -14.70 +  -0.48)

alignment

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secondary structure

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dotplot

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Window 0

Location 12,212,102 – 12,212,197
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 91.79
Shannon entropy 0.14229
G+C content 0.27579
Mean single sequence MFE -18.76
Consensus MFE -14.82
Energy contribution -14.86
Covariance contribution 0.04
Combinations/Pair 1.11
Mean z-score -2.23
Structure conservation index 0.79
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.85
SVM RNA-class probability 0.834369
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 12212102 95 - 24543557
AUUUCCUGUUGCUAAAUUUUUCCGCUAUUAAACUCUAAUGGCGGUGUUUAAUGGUUGAAAAUUAAAGUUUUUGAAUUAUUACUAUUUCAUUUAGA
...........((((((....(((((((((.....)))))))))....((((((((.((((.......)))).)))))))).......)))))). ( -19.60, z-score =  -2.80, R)
>droYak2.chr3L 12262755 95 - 24197627
AUUUCCGGUUGCUAAACUUUUCCGCUAUUAAACUCCGAUGGUGGUUUUUAAUGGUCGUAAAUUAAAGUUUGUAAAUUAUUAAUAUUUCAUUUAGU
........((((.(((((((..((((((((((..(((....)))..)))))))).))......)))))))))))..................... ( -15.60, z-score =  -0.96, R)
>droEre2.scaffold_4784 12201897 95 - 25762168
AUUUCCGGUUGCAAAACUUUUCCGCUAUUAAACUCUAAUGUUGGCGUUUAAUGGUUGUAAAUUAAAGUUUGUGAAAUAUUAAUAUUUCAUUUAGA
.............(((((((.(.((((((((((.(((....))).)))))))))).)......)))))))((((((((....))))))))..... ( -18.60, z-score =  -2.04, R)
>droSec1.super_0 4397151 95 - 21120651
AUUUCCUGUUGCUAAACUUUUCCGCUAUUAAACUCUGAUGGCGGUGUUUAAUGGUUGAAAAUUAAAGUUUUUGAAUUAUUAAUAUUUCAUUUAGA
...........(((((.....(((((((((.....)))))))))...(((((((((.((((.......)))).))))))))).......))))). ( -20.00, z-score =  -2.74, R)
>droSim1.chr3L 11586150 95 - 22553184
AUUUCCUGUCGCUAAACUUUUCCGCUAUUAAACUCUGAUGGCGGUGUUUAAUGGUUGAAAAUUAAAGUUUUUGAAUUAUUAAUAUUUCAUUUAGA
...........(((((.....(((((((((.....)))))))))...(((((((((.((((.......)))).))))))))).......))))). ( -20.00, z-score =  -2.62, R)
>consensus
AUUUCCUGUUGCUAAACUUUUCCGCUAUUAAACUCUGAUGGCGGUGUUUAAUGGUUGAAAAUUAAAGUUUUUGAAUUAUUAAUAUUUCAUUUAGA
...........(((((.....(((((((((.....)))))))))...((((((((..(((((....)))))..).))))))).......))))). (-14.82 = -14.86 +   0.04)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:32 2011