| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,204,327 – 12,204,438 |
| Length | 111 |
| Max. P | 0.612873 |
| Location | 12,204,327 – 12,204,438 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 90.28 |
| Shannon entropy | 0.16877 |
| G+C content | 0.36097 |
| Mean single sequence MFE | -27.14 |
| Consensus MFE | -20.81 |
| Energy contribution | -22.65 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.612873 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12204327 111 - 24543557 AAGGGCUUGACUAGGCAUUGAUUAAGUUUUUUUUGAAUAGUUUGCAAUGUACAUAUA------UUUUAAUCAAGGCUGCAAGCCAUUUGUUGACCGAACUAUUUUGAAACGGUUCGG ...((((((....(((.(((((((((.......((.(((........))).))....------.))))))))).))).)))))).........((((((..((....))..)))))) ( -29.70, z-score = -2.75, R) >droYak2.chr3L 12254818 108 - 24197627 AAGGGCUUGACUAGGCUUUGACUAAGU---UUUUGAAUAGUUUGCAAUGUACAUAUA------CUUUAAUCGAGGCUGCAAGCCAUUUGUUGACCGAACUAUGUUGAAACGGUUCGG ...((((((....((((((((..((((---...((.(((........))).))...)------)))...)))))))).)))))).........((((((..(......)..)))))) ( -32.70, z-score = -3.22, R) >droEre2.scaffold_4784 12193996 108 - 25762168 AAGGGCUUGACUAGGCUUUGAAUAAGU---UUUUGAUUAGUUUGCAAUGUACAUAUA------UUUUAAUCAAGGCUGCAAGCCAUUUGUUGGCCGAACUUUUUUGAAACGGUUCGG ...((((((....((((((((.((((.---...((..((........))..))....------.)))).)))))))).)))))).........(((((((.((....)).))))))) ( -27.50, z-score = -1.60, R) >droSec1.super_0 4389516 109 - 21120651 AAGGGCUUGACUAGGCAUUGAUUAAGU--GUUUUGAAUAGUUUGCAAUGUACAUAUA------UUUUAAUCAAGGAUGCAAGCCAUUUGUUAACCGAACUAUUUUGAAACGGUUCGG ...((((((.(....(.(((((((((.--....((.(((........))).))....------.))))))))).)..))))))).........((((((..((....))..)))))) ( -25.60, z-score = -1.61, R) >droSim1.chr3L 11578431 110 - 22553184 AAGGGCUUGACUAGGCAUUGAUUAAGU--UUUUUGAAUAGUUUGCAAUGUACAUACAUAUAUUUUUUAAUCAAGGCUG-----CAUUUGUUGACCGAACUAUUUUGAAACGGUUCGG ..((.((((((((..((..((......--))..))..)))......((((....))))...........))))).)).-----..........((((((..((....))..)))))) ( -20.20, z-score = -0.25, R) >consensus AAGGGCUUGACUAGGCAUUGAUUAAGU___UUUUGAAUAGUUUGCAAUGUACAUAUA______UUUUAAUCAAGGCUGCAAGCCAUUUGUUGACCGAACUAUUUUGAAACGGUUCGG ...((((((....(((.(((((((((.......((.(((........))).))...........))))))))).))).)))))).........((((((..((....))..)))))) (-20.81 = -22.65 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:29 2011