| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,170,384 – 12,170,434 |
| Length | 50 |
| Max. P | 0.989133 |
| Location | 12,170,384 – 12,170,434 |
|---|---|
| Length | 50 |
| Sequences | 4 |
| Columns | 50 |
| Reading direction | reverse |
| Mean pairwise identity | 91.67 |
| Shannon entropy | 0.13358 |
| G+C content | 0.39500 |
| Mean single sequence MFE | -13.28 |
| Consensus MFE | -12.52 |
| Energy contribution | -12.65 |
| Covariance contribution | 0.13 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.94 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.35 |
| SVM RNA-class probability | 0.989133 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12170384 50 - 24543557 CACAUGCUCUAUGUAUGAGAAAAUGUCUGCGUCUAAAGGCGUUUUUGUUU ..(((((.....))))).((((((((((........)))))))))).... ( -13.90, z-score = -2.96, R) >droYak2.chr3L 12218274 50 - 24197627 CACAUGCCCUAUGUAAAAGGAAAUGUCUGCGUCUAAAGGCGUUUCUAUUU .(((((...)))))....((((((((((........)))))))))).... ( -12.20, z-score = -2.44, R) >droSec1.super_0 4355319 50 - 21120651 CACAUGCUCUUUGUAUGAGGAAAUGUCUGCGACUAAAGGCGUUUUUGUUU ..(((((.....))))).((((((((((........)))))))))).... ( -13.50, z-score = -2.29, R) >droSim1.chr3L 11541672 50 - 22553184 CACAUGCUCUAUGUAUGAGGAAAUGUCUGCGACUAAAGGCGUUUUUGUUU ..(((((.....))))).((((((((((........)))))))))).... ( -13.50, z-score = -2.35, R) >consensus CACAUGCUCUAUGUAUGAGGAAAUGUCUGCGACUAAAGGCGUUUUUGUUU ..(((((.....))))).((((((((((........)))))))))).... (-12.52 = -12.65 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:26 2011