| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,165,952 – 12,166,007 |
| Length | 55 |
| Max. P | 0.729131 |
| Location | 12,165,952 – 12,166,007 |
|---|---|
| Length | 55 |
| Sequences | 5 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 73.63 |
| Shannon entropy | 0.42125 |
| G+C content | 0.37145 |
| Mean single sequence MFE | -10.98 |
| Consensus MFE | -7.46 |
| Energy contribution | -7.86 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.729131 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12165952 55 - 24543557 AGGGGGGUCAUGGGCUCCCAUGGCAGGCAAC---AAAAAAAUAUAUAUGUAUAUAUAU---- ......(((((((....))))))).(....)---......(((((((....)))))))---- ( -14.50, z-score = -1.86, R) >droPer1.super_9 791576 56 - 3637205 -UGAGGGUCAUGGGCUCACAUCGUAAA-AGCAAAAACAAAAUCACAAAAUAAAUAUGU---- -...((((.....))))..........-..............................---- ( -4.10, z-score = -0.06, R) >dp4.chrXR_group6 2499293 56 - 13314419 -UGGGGGUCAUGGGCUCACAUCGUAAA-AGCAAAAACAAAAUCACAAAAUAAAUAUGU---- -((.((((.....)))).)).......-..............................---- ( -4.00, z-score = 0.08, R) >droSec1.super_0 4351042 59 - 21120651 AGGGGGGUCAUGGGCUCCCAUGGCAGGCAAC---AAAAAAAUCUAUAUAUAUAUGUAUAUAU ......(((((((....))))))).(....)---.........(((((((....))))))). ( -15.40, z-score = -1.84, R) >droSim1.chr3L 11537308 62 - 22553184 AGGGGGGUCAUGGGCUCCCAUGGCAGGCAACAAAAAAAAAAUGUAUAUAUAUAUGUAUAUAU ......(((((((....))))))).(....).........(((((((((....))))))))) ( -16.90, z-score = -2.56, R) >consensus AGGGGGGUCAUGGGCUCCCAUGGCAGGCAACAAAAAAAAAAUCUAUAUAUAUAUAUAU____ ..((((((.....))))))........................................... ( -7.46 = -7.86 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:24 2011