| Sequence ID | dm3.chr2L |
|---|---|
| Location | 5,000,704 – 5,000,784 |
| Length | 80 |
| Max. P | 0.615015 |
| Location | 5,000,704 – 5,000,784 |
|---|---|
| Length | 80 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 75.93 |
| Shannon entropy | 0.39980 |
| G+C content | 0.47085 |
| Mean single sequence MFE | -18.76 |
| Consensus MFE | -12.23 |
| Energy contribution | -13.87 |
| Covariance contribution | 1.64 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.615015 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 5000704 80 - 23011544 UCCGAAAUUCGCCAUUGGCCCUUUCCUCUUCCCUUAUUUGCCUACAGUAAGGGCCAAGAUGUUAGUGAUCUUCGGAUAAG----------------- ((((((..((((..(((((((((.........................))))))))).......))))..))))))....----------------- ( -24.41, z-score = -3.23, R) >droSim1.chr2L 4856466 80 - 22036055 UCCGCAAUUCACCAUCGGCCCUUUCCUCUUCCCUUCUUUGCCCACAGUAAGGUCCAAGAUGUUAGUGAUCUUCGGAUAAG----------------- ((((....((((((((((......)).........((((((.....)))))).....))))...))))....))))....----------------- ( -15.40, z-score = -1.22, R) >droSec1.super_5 3087232 80 - 5866729 UCCGCAAUUCACCAUCGGCCCUUUCCUCUUUCCUUCUUUGCCCACAGUAAGGUCCAAAAUGUUAGUGAUCUUCGGAUAAG----------------- ((((....((((....((......)).........((((((.....))))))............))))....))))....----------------- ( -12.10, z-score = -0.50, R) >droYak2.chr2L 11798219 94 + 22324452 UUCGAAAUUCGCCAUAGGCCCUUUCCUCUUCCCUUCUUUGCACACAGCAAGGGCCAAGAUGAUUGGGAUCUUCAGAUUACUCAUUCGGUCCAUU--- .(((((....(((...)))((..((.((((((((....(((.....)))))))..)))).))..))((((....)))).....)))))......--- ( -20.40, z-score = -0.12, R) >droEre2.scaffold_4929 5078813 95 - 26641161 UUCGAAAUUCGCCAUAGGCCC-UUCCUCUUCCCUUCCUUGCGCACAGCAAGGGCCAAUACGAUAGGCAU-UUCGGAUUACUCAUUCUUCGUUUCAUU ((((((((..(((..(((...-..))).......(((((((.....)))))))...........)))))-))))))..................... ( -21.50, z-score = -1.55, R) >consensus UCCGAAAUUCGCCAUAGGCCCUUUCCUCUUCCCUUCUUUGCCCACAGUAAGGGCCAAGAUGUUAGUGAUCUUCGGAUAAG_________________ ((((((..((((((((((((((................(((.....)))))))))..))))...))))..))))))..................... (-12.23 = -13.87 + 1.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:17:45 2011