Locus 7089

Sequence ID dm3.chr3L
Location 12,086,224 – 12,086,319
Length 95
Max. P 0.953286
window9764

overview

Window 4

Location 12,086,224 – 12,086,319
Length 95
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 92.73
Shannon entropy 0.11499
G+C content 0.40988
Mean single sequence MFE -25.11
Consensus MFE -21.76
Energy contribution -22.32
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -2.39
Structure conservation index 0.87
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.59
SVM RNA-class probability 0.953286
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3L 12086224 95 - 24543557
AAACUUGUGGAUUUCGAUUUCGAUGCGGAAUCGAAGAGCUUUGUCUCAACAUUAUAGCCAUAUAUAUAUCCACAGACUUAGCCAUGGCCAGAAGA
...(((.(((.(((((((((((...))))))))))).(((..((((......((((......)))).......))))..))).....))).))). ( -26.22, z-score =  -2.74, R)
>droSim1.chr3L 11456953 93 - 22553184
AAACUUGUGGAUUUCGAUUUCGAUGCGGAAUCGAAGAGCUUUGUCUCAACAUUAUAGCC--AUAUAUAUCCGCAGACCUAGCCAUGGCCAGAAGA
...(((.(((.(((((((((((...))))))))))).(((..((((......((((...--...)))).....))))..))).....))).))). ( -25.50, z-score =  -2.05, R)
>droSec1.super_0 4271587 93 - 21120651
AAACUUGUGGAUUUCGAUUUCGAUGCGGAAUCGAAGUGCUUUGUCUCAACAUUAUAGCC--AUAUAUAUCCGCAGACCUAGCCAUGGCCAGAAGA
...(((.(((((((((((((((...))))))))))))(((..((((......((((...--...)))).....))))..))).....))).))). ( -26.70, z-score =  -2.32, R)
>droEre2.scaffold_4784 12076208 87 - 25762168
AAACUUGUGGAUUUCGAUUUCGAUGCGGAAUCGAAGAGUUUUGUCUCAACAUUAUAGCC--AUAUAUAUCCACAGACUAAGCCA------GAAGA
....((((((((((((((((((...))))))))))(((......)))............--......)))))))).........------..... ( -22.00, z-score =  -2.45, R)
>consensus
AAACUUGUGGAUUUCGAUUUCGAUGCGGAAUCGAAGAGCUUUGUCUCAACAUUAUAGCC__AUAUAUAUCCACAGACCUAGCCAUGGCCAGAAGA
...(((.(((.(((((((((((...))))))))))).(((..((((......((((......)))).......))))..))).....))).))). (-21.76 = -22.32 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:19 2011