| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,086,018 – 12,086,108 |
| Length | 90 |
| Max. P | 0.898239 |
| Location | 12,086,018 – 12,086,108 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 92.19 |
| Shannon entropy | 0.14561 |
| G+C content | 0.49823 |
| Mean single sequence MFE | -31.60 |
| Consensus MFE | -28.13 |
| Energy contribution | -28.88 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.898239 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12086018 90 - 24543557 GUGCCUAUAUUAUAAUGGGCAUAA--AUAUAUAAGCUAUCCCCAAUAUGGGGGCGCUUGGCAAGUGUCGCACGAGCAGAACGUGCCGCCUUG ((((((((......))))))))..--.....(((((..(((((.....))))).))))).((((.((.(((((.......))))).)))))) ( -33.50, z-score = -2.30, R) >droSim1.chr3L 11456745 92 - 22553184 GUGCCUAUAUUAUAAUGGGCAUAAACAUAUAUAAGCUAUCCCCGAUAUGGGGGCGCUUGGCAAGUGUCGCACGAGCAGAACGUGCCGCCUUG ((((((((......)))))))).........(((((..(((((.....))))).))))).((((.((.(((((.......))))).)))))) ( -32.80, z-score = -1.88, R) >droSec1.super_0 4271381 90 - 21120651 GUGCCUAUAUUAUAAUGGGCAUAA--AUAUAUAAGCUAUCCCCGAUAUGGGGGCGCUUGGCAAGUGUCGCACGAGCAGAACGUGCCACCUUG ((((((((......))))))))..--.....(((((..(((((.....))))).))))).((((.((.(((((.......))))).)))))) ( -32.50, z-score = -2.25, R) >droYak2.chr3L 12133132 88 - 24197627 GUGCCUAUAUUAUAAUGGCCAUAA----AUAUAAGCCAUCCCCAAUAUGGGGGCGCUUGGCAAGUGUCGCACGAGCAGAACGUGCCGCCUUG (((((.........(((((.....----......))))).(((.....))))))))....((((.((.(((((.......))))).)))))) ( -28.50, z-score = -0.96, R) >droEre2.scaffold_4784 12076006 88 - 25762168 GUGCCUAUAUUAUAAUGGGCAUAA----AUAUAAGCCAUCCCCAAUAUGGGGGCGCUUGGCAAGUGUCGCACGAGCAGAACGUGCCGCCUUG ((((((((......))))))))..----...(((((..(((((.....))))).))))).((((.((.(((((.......))))).)))))) ( -33.80, z-score = -2.38, R) >droAna3.scaffold_13337 11465660 90 + 23293914 GUGCCUAUAAUAUAAUGGGCAUAA--AUAUAAGCUCCAUCGAAUAUAUGGGGGCGCUCGGCAAGUGUCGCACGAACAGAACGUGCCGCCUUG ((((((...(((((((((((....--......)).))))....)))))..))))))....((((.((.(((((.......))))).)))))) ( -28.50, z-score = -1.52, R) >consensus GUGCCUAUAUUAUAAUGGGCAUAA__AUAUAUAAGCCAUCCCCAAUAUGGGGGCGCUUGGCAAGUGUCGCACGAGCAGAACGUGCCGCCUUG ((((((((......)))))))).........(((((..(((((.....))))).))))).((((.((.(((((.......))))).)))))) (-28.13 = -28.88 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:18 2011