| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,071,360 – 12,071,453 |
| Length | 93 |
| Max. P | 0.642227 |
| Location | 12,071,360 – 12,071,453 |
|---|---|
| Length | 93 |
| Sequences | 4 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 74.43 |
| Shannon entropy | 0.38515 |
| G+C content | 0.35600 |
| Mean single sequence MFE | -23.41 |
| Consensus MFE | -11.55 |
| Energy contribution | -12.17 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.642227 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12071360 93 - 24543557 -----------------ACUAU-GGAUCAUUACAAUCUCAAAUCAAAAUCAACUGAAGAUUGCACGUAGCGAUUUAAUUUGGUACGAGAUAAGUGCCAC----CACUUUUGGUGC -----------------..(((-..(((....((((((....(((........)))))))))..((((.(((......))).)))).)))..))).(((----((....))))). ( -18.80, z-score = -0.95, R) >droYak2.chr3L 12118284 98 - 24197627 -----------------ACUAUAGGAAUAUUACAAUCUGUAAUCAGAAUCAACUUAAGAUUGCACGUAGCGAUUUAUUUUGGUACGAGAUAAGUACAACAAGGUGGUUUUGGUGC -----------------..((((((..........))))))((((((((((.(((.(((((((.....)))))))......((((.......))))...))).)))))))))).. ( -21.30, z-score = -1.62, R) >droSec1.super_0 4256795 109 - 21120651 AAUUUAGCCCAGUUGUAACUG--GUAAUAUUACAAUCUUAAAUCAAAAUCAACCUUAGAUUGCACGUAGCGAUUUAAUUUGAUACGAGAUAAGUGAAAC----CUUUUUUGGUGG ........(((((....))))--).....((((.(((((..((((((.......(((((((((.....)))))))))))))))..)))))..)))).((----(......))).. ( -22.91, z-score = -1.88, R) >droSim1.chr3L 11441909 108 - 22553184 AAUUUAGCCCAGUUGUAGCUG--GGAGUAUUUCAAUCUUAAAUCAAAAUCCACCUUAGAUUGCACGUAGCGAUUUAAUUUGAUACGAGAUAAGUGCCAC----CAGUUUUGGUG- .......((((((....))))--)).((((((..(((((..((((((.......(((((((((.....)))))))))))))))..)))))))))))(((----(......))))- ( -30.61, z-score = -3.70, R) >consensus _________________ACUA__GGAAUAUUACAAUCUUAAAUCAAAAUCAACCUAAGAUUGCACGUAGCGAUUUAAUUUGAUACGAGAUAAGUGCAAC____CAGUUUUGGUGC .........................................(((((((........(((((((.....)))))))....((((((.......))))))........))))))).. (-11.55 = -12.17 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:17 2011