| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,067,608 – 12,067,698 |
| Length | 90 |
| Max. P | 0.867254 |
| Location | 12,067,608 – 12,067,698 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 103 |
| Reading direction | reverse |
| Mean pairwise identity | 78.19 |
| Shannon entropy | 0.33402 |
| G+C content | 0.33855 |
| Mean single sequence MFE | -23.25 |
| Consensus MFE | -13.32 |
| Energy contribution | -14.32 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.31 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.867254 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12067608 90 - 24543557 UAUUAUUUUGAUUC-AAGUGAUAAAGCAGUUGGCCACUUAG-----AAAACCUGGUGGACUUUAAAAUGCCGGCUGCUUAAAUUGCUCACUUG--UGA----- .............(-(((((((((((((((((((...((((-----(...((....))..)))))...))))))))))....))).)))))))--...----- ( -26.30, z-score = -3.01, R) >droYak2.chr3L 12114580 96 - 24197627 UAUAAUUUGUAUUCAAAGUGAUAAAGCGGUUGGCAACUUAGUUUCCAGAACCUGGUGGAGCAUAAAAUGUCUUUUGUACAAAUUGCGCAUUUA--UGA----- ..(((((((((..(((((.((((..((.....))......((((((((...))))..))))......))))))))))))))))))........--...----- ( -17.10, z-score = 0.48, R) >droSec1.super_0 4253095 98 - 21120651 UAUUAUUUGGAUUCAAAGUGAUAAAGCAGUUGGCAACUUAG-----AAAACCUGGUGGACUAUAAAAUGCGGGCUGCUUAAAUUGAUUGAUAAAUUGAUUAAA ((((((((.......))))))))((((((((.(((..(((.-----....((....))....)))..))).)))))))).(((..(((....)))..)))... ( -24.00, z-score = -3.22, R) >droSim1.chr3L 11437493 98 - 22553184 UAUUAUUUGGUUUCAAAGUGAUAAAGCAGUUGGCAACUUAG-----AAAACGUGGUGGACUAUAAAAUGCCGGCUGCUUAAAUUGAUUGAUAAAUUGAUUAAA ((((((((.......))))))))((((((((((((.....(-----....)((((....))))....)))))))))))).(((..(((....)))..)))... ( -25.60, z-score = -3.47, R) >consensus UAUUAUUUGGAUUCAAAGUGAUAAAGCAGUUGGCAACUUAG_____AAAACCUGGUGGACUAUAAAAUGCCGGCUGCUUAAAUUGAUCAAUAA__UGA_____ ((((((((.......))))))))((((((((((((..(((......................)))..))))))))))))........................ (-13.32 = -14.32 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:16 2011