| Sequence ID | dm3.chr3L |
|---|---|
| Location | 12,049,932 – 12,050,028 |
| Length | 96 |
| Max. P | 0.772289 |
| Location | 12,049,932 – 12,050,028 |
|---|---|
| Length | 96 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 62.53 |
| Shannon entropy | 0.57250 |
| G+C content | 0.32215 |
| Mean single sequence MFE | -16.89 |
| Consensus MFE | -8.34 |
| Energy contribution | -10.14 |
| Covariance contribution | 1.80 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.772289 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3L 12049932 96 + 24543557 UCUUGAAGAUCUUAAGUGCUACCAUUACCAAUUUUGGUAUGCAGACACUGAUUAUUAUUAUCAGUAUGUAUUUUCGA-AGCCUUAAAAUUUCAAAUG--------------------- ..((((((...(((((.(((.....(((((....)))))((((...((((((.......)))))).)))).......-))))))))..))))))...--------------------- ( -21.40, z-score = -2.99, R) >droSim1.chr3L 11419149 76 + 22553184 UCUUGGUGAUCUUAAGUGCUACCAUUACCAAUUUUGGUAUGCAGGCACAGAUUAUUAUUAU----AUGUAUUUUCAAAUA-------------------------------------- ...(((((((((...(((((..(((.((((....)))))))..))))))))))))))....----...............-------------------------------------- ( -17.70, z-score = -2.18, R) >droSec1.super_0 4235457 85 + 21120651 UCUUUUAGAUCUUAAGUGCUAUCAUUACCAAUUUUGGUAUGCAGGCACAGAUAAUUAUUAU----AUGUAUUUUCGA-UACCUUCAAAUA---------------------------- ........((((...(((((..(((.((((....)))))))..))))))))).........----..(((((...))-))).........---------------------------- ( -13.30, z-score = -0.94, R) >droYak2.chr3L 12096960 114 + 24197627 UCUCGGAGAUCUUAAAUGCUACCAUUAUCAAUUUUGGUAUGGAGGCACAGAUUUUUAUUAU----CUUUUUGACCCACCAACUUAGACCUCUUAAAAUCGCAAAUGAAGUCACAAAUA ....((((((((....((((.((((.((((....)))))))).)))).)))))))).....----....................(((.((..............)).)))....... ( -18.24, z-score = -0.38, R) >droEre2.scaffold_4784 12039178 76 + 25762168 UCUCGGAAAUCUUAAAGGCUACCAUUAUACAUUUUGGUGUGCAGGCACAGAAUUUUAUUAU----GCUUUGGCCCGAAUA-------------------------------------- ..(((............(((((((..........))))).)).(((.((((..........----..))))))))))...-------------------------------------- ( -13.80, z-score = 0.20, R) >consensus UCUUGGAGAUCUUAAGUGCUACCAUUACCAAUUUUGGUAUGCAGGCACAGAUUAUUAUUAU____AUGUAUUUUCGA_UA_CUU__A_______________________________ ....((((((((...(((((..(((.((((....)))))))..))))))))))))).............................................................. ( -8.34 = -10.14 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 23:20:15 2011